RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MED22Q15528 200 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 LY6G5CQ5SRR4 150 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 FAM180BQ6P0A1 224 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 HEATR4Q86WZ0 1026 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 MTERF3Q96E29 417 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 MGLLQ99685 303 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 SLC6A16Q9GZN6 736 aa18.38■□□□□ 0.53
VPS28-213ENST00000530983 CNOT2Q9NZN8 540 aaKnown RBP18.38■□□□□ 0.53
VPS28-213ENST00000530983 LTBP2Q14767 1821 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 ARRDC5A6NEK1 342 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 FFAR1O14842 300 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 HAT1O14929 419 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 SNPHO15079 494 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 KIAA0513O60268 411 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 LILRB5O75023 590 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 SYN1P17600 705 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 CNR2P34972 360 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 DGKEP52429 567 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 CRISP1P54107 249 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 TSTQ16762 297 aaKnown RBP18.37■□□□□ 0.53
VPS28-213ENST00000530983 TOR1AIP1Q5JTV8 583 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 HIST2H2AA3Q6FI13 130 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 FRMPD2BQ6IN97 320 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 PTCHD4Q6ZW05 846 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 ANKRD33Q7Z3H0 272 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 ZNF366Q8N895 744 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 VN1R2Q8NFZ6 395 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 SLC5A11Q8WWX8 675 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 ZNF486Q96H40 463 aaPredicted RBP18.37■□□□□ 0.53
VPS28-213ENST00000530983 SORBS1Q9BX66 1292 aaKnown RBP18.37■□□□□ 0.53
VPS28-213ENST00000530983 TAAR2Q9P1P5 351 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 KCND3Q9UK17 655 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 OGDHLQ9ULD0 1010 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 PEX16Q9Y5Y5 336 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 KRT75O95678 551 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 SOD1P00441 154 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 IFNW1P05000 195 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 ALOX12P18054 663 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 MAGP20916 626 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 LIM2P55344 173 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 CLPPQ16740 277 aaPredicted RBP18.37■□□□□ 0.53
VPS28-213ENST00000530983 NXPE4Q6UWF7 544 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 CCDC149Q6ZUS6 474 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 KIAA0907Q7Z7F0 614 aaPredicted RBP18.37■□□□□ 0.53
VPS28-213ENST00000530983 MMAAQ8IVH4 418 aaKnown RBP18.37■□□□□ 0.53
VPS28-213ENST00000530983 OR9A1PQ8NGU1 263 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 APOBEC4Q8WW27 367 aaKnown RBP18.37■□□□□ 0.53
VPS28-213ENST00000530983 TP63Q9H3D4 680 aaPredicted RBP18.37■□□□□ 0.53
VPS28-213ENST00000530983 CXorf36Q9H7Y0 433 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 ENOPH1Q9UHY7 261 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 PCDHGB6Q9Y5F9 930 aa18.37■□□□□ 0.53
VPS28-213ENST00000530983 CARNS1A5YM72 827 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 A6NL46 340 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 IRS1P35568 1242 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 ETV6P41212 452 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 SLC15A1P46059 708 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 DSTNP60981 165 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 TP53BP2Q13625 1128 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 SSX1Q16384 188 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 PLAG1Q6DJT9 500 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 DESI1Q6ICB0 168 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 UNC5DQ6UXZ4 953 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 PARS2Q7L3T8 475 aaKnown RBP18.36■□□□□ 0.53
VPS28-213ENST00000530983 KREMEN2Q8NCW0 462 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 TAPBPLQ9BX59 468 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 NDEL1Q9GZM8 345 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 EPHX3Q9H6B9 360 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 DKK3Q9UBP4 350 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 DSPPQ9NZW4 1301 aa18.36■□□□□ 0.53
VPS28-213ENST00000530983 ARHGAP33O14559 1287 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 MPZL2O60487 215 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 MED26O95402 600 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 LEXMQ3ZCV2 418 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.35■□□□□ 0.53
VPS28-213ENST00000530983 VN1R5Q7Z5H4 357 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 RSPO3Q9BXY4 272 aaPredicted RBP18.35■□□□□ 0.53
VPS28-213ENST00000530983 TRBV4-1A0A0J9YWV2 114 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 K7ESM1 405 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 CCRL2O00421 344 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 ASNA1O43681 348 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 POU1F1P28069 291 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 PIK3CBP42338 1070 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 TLE2Q04725 743 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 TEAD2Q15562 447 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 BCL7AQ4VC05 210 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 RPS26P11Q5JNZ5 115 aaPredicted RBP18.35■□□□□ 0.53
VPS28-213ENST00000530983 REEP3Q6NUK4 255 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 IKBIPQ70UQ0 350 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 TRAPPC5Q8IUR0 188 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 SLC44A2Q8IWA5 706 aaPredicted RBP18.35■□□□□ 0.53
VPS28-213ENST00000530983 TAGAPQ8N103 731 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 WDR36Q8NI36 951 aaKnown RBP18.35■□□□□ 0.53
VPS28-213ENST00000530983 PDXPQ96GD0 296 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 OR2AG1Q9H205 316 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 MIEF1Q9NQG6 463 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 TDP1Q9NUW8 608 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 CLN6Q9NWW5 311 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 SNX8Q9Y5X2 465 aa18.35■□□□□ 0.53
VPS28-213ENST00000530983 MN1Q10571 1320 aaPredicted RBP18.35■□□□□ 0.53
VPS28-213ENST00000530983 FGF18O76093 207 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms