RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TMEM229AB2RXF0 380 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 MAP3K13O43283 966 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 LSSP48449 732 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 RAB8AP61006 207 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 RELAQ04206 551 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 SAXO2Q658L1 398 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 OR52E8Q6IFG1 317 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 SPESP1Q6UW49 350 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 KCT2Q8NC54 265 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 MAGEE2Q8TD90 523 aaPredicted RBP19.64■□□□□ 0.73
VPS28-209ENST00000528142 CLDN23Q96B33 292 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 NEURL3Q96EH8 262 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 ZBED6CLQ96FA7 236 aaPredicted RBP19.64■□□□□ 0.73
VPS28-209ENST00000528142 NEUROD4Q9HD90 331 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 FANCMQ8IYD8 2048 aa19.64■□□□□ 0.73
VPS28-209ENST00000528142 DPPA5A6NC42 116 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 WASHC1A8K0Z3 465 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 PLOD2O00469 737 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 CSF2P04141 144 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 CERS1P27544 350 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 CD38P28907 300 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 IST1P53990 364 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 MYBPC1Q00872 1141 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 MERTKQ12866 999 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 SPIDRQ14159 915 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 TMEM26Q6ZUK4 368 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 ZDHHC21Q8IVQ6 265 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 FAM46DQ8NEK8 389 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 ZDHHC1Q8WTX9 485 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 GAL3ST3Q96A11 431 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 ADI1Q9BV57 179 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 SLC35C2Q9NQQ7 365 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 EVA1BQ9NVM1 165 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 SMPD3Q9NY59 655 aaPredicted RBP19.63■□□□□ 0.73
VPS28-209ENST00000528142 MAGED1Q9Y5V3 778 aaPredicted RBP19.63■□□□□ 0.73
VPS28-209ENST00000528142 SNX8Q9Y5X2 465 aa19.63■□□□□ 0.73
VPS28-209ENST00000528142 B4GALT2O60909 372 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 GUCY1B2O75343 617 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 PRKRAO75569 313 aaKnown RBP19.62■□□□□ 0.73
VPS28-209ENST00000528142 FKBP9O95302 570 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 MAOBP27338 520 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 ARSFP54793 590 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 SNRPNP63162 240 aaKnown RBP19.62■□□□□ 0.73
VPS28-209ENST00000528142 RGS1Q08116 209 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 TGM3Q08188 693 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 SLC36A3Q495N2 470 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 VTCN1Q7Z7D3 282 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 IQCHQ86VS3 1027 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 THAP11Q96EK4 314 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 HSH2DQ96JZ2 352 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 HRASLS2Q9NWW9 162 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 PDP2Q9P2J9 529 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 PGRMC2O15173 223 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 SNRNP200O75643 2136 aaKnown RBP19.62■□□□□ 0.73
VPS28-209ENST00000528142 SMIM10L1P0DMW3 83 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 PRIM2P49643 509 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 CDK9P50750 372 aaKnown RBP19.62■□□□□ 0.73
VPS28-209ENST00000528142 ALDH3A2P51648 485 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 CLCN2P51788 898 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 RACK1P63244 317 aaKnown RBP19.62■□□□□ 0.73
VPS28-209ENST00000528142 HHEXQ03014 270 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 HSPB3Q12988 150 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 SCARB2Q14108 478 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 MYBPC3Q14896 1274 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 ZNF630Q2M218 657 aaPredicted RBP19.62■□□□□ 0.73
VPS28-209ENST00000528142 OTUD3Q5T2D3 398 aaPredicted RBP19.62■□□□□ 0.73
VPS28-209ENST00000528142 CCDC80Q76M96 950 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 ZDHHC13Q8IUH4 622 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 RBM12BQ8IXT5 1001 aaKnown RBP19.62■□□□□ 0.73
VPS28-209ENST00000528142 UBALD2Q8IYN6 164 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 SVOPLQ8N434 492 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 CAMKK1Q8N5S9 505 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 UTP15Q8TED0 518 aaKnown RBP19.62■□□□□ 0.73
VPS28-209ENST00000528142 TBC1D20Q96BZ9 403 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 SMIM10Q96HG1 83 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 GLIPR2Q9H4G4 154 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 CES1P1Q9UKY3 287 aa19.62■□□□□ 0.73
VPS28-209ENST00000528142 A0A0J9YVX5 310 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 G3V2T6 193 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 GNGT2O14610 69 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 P2RX6O15547 441 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 PROM1O43490 865 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 AIFM1O95831 613 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 ALPLP05186 524 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 ARAFP10398 606 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 NME1P15531 152 aaKnown RBP19.61■□□□□ 0.73
VPS28-209ENST00000528142 AQP1P29972 269 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 BTN3A2P78410 334 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 DAG1Q14118 895 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 CYBRD1Q53TN4 286 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 DGLUCYQ7Z3D6 616 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 TMEM179BQ7Z7N9 219 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 STK32CQ86UX6 486 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 PJA1Q8NG27 643 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 NFKBIDQ8NI38 313 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 BAHD1Q8TBE0 780 aaPredicted RBP19.61■□□□□ 0.73
VPS28-209ENST00000528142 AMDHD1Q96NU7 426 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 KLHL25Q9H0H3 589 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 FBXW2Q9UKT8 454 aa19.61■□□□□ 0.73
VPS28-209ENST00000528142 ABCG2Q9UNQ0 655 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms