RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 NKX6-1P78426 367 aaPredicted RBP18.76■□□□□ 0.59
SQSTM1-215ENST00000514093 HSP90AA5PQ58FG0 334 aa18.76■□□□□ 0.59
SQSTM1-215ENST00000514093 TMPRSS11BQ86T26 416 aa18.76■□□□□ 0.59
SQSTM1-215ENST00000514093 VWA5B2Q8N398 1253 aa18.76■□□□□ 0.59
SQSTM1-215ENST00000514093 TMEM132CQ8N3T6 1108 aa18.76■□□□□ 0.59
SQSTM1-215ENST00000514093 AIF1LQ9BQI0 150 aa18.76■□□□□ 0.59
SQSTM1-215ENST00000514093 OR8D2Q9GZM6 311 aa18.76■□□□□ 0.59
SQSTM1-215ENST00000514093 MAGEB16A2A368 324 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 PABPN1LA6NDY0 278 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 RAB38P57729 211 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 POU4F3Q15319 338 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 PCBP2Q15366 365 aaKnown RBP eCLIP18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 ELAVL1Q15717 326 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 RBM20Q5T481 1227 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 POMZP3Q6PJE2 187 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 NXPE4Q6UWF7 544 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 AGGF1Q8N302 714 aaeCLIP18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 GOLM1Q8NBJ4 401 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 LRRN4CLQ8ND94 238 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 PTPMT1Q8WUK0 201 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 FBXL8Q96CD0 374 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 LRRC46Q96FV0 321 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 SGCZQ96LD1 299 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 SLC6A15Q9H2J7 730 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 TAS2R13Q9NYV9 303 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 DYRK1BQ9Y463 629 aa18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-215ENST00000514093 CD53P19397 219 aa18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 TRPC1P48995 793 aa18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 RNF4P78317 190 aa18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 GPS1Q13098 491 aa18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 THOC6Q86W42 341 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 CIARTQ8N365 385 aaPredicted RBP18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 CALML6Q8TD86 181 aa18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 CSF3RQ99062 836 aa18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 EPB41L4BQ9H329 900 aa18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 PELI2Q9HAT8 420 aa18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 MTRF1LQ9UGC7 380 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 MAD1L1Q9Y6D9 718 aa18.74■□□□□ 0.59
SQSTM1-215ENST00000514093 NCKAP5O14513 1909 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 ERI3O43414 337 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 TNNI3P19429 210 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 HNRNPH1P31943 449 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 AGFG1P52594 562 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 STXBP1P61764 594 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 FBXL19-AS1Q494R0 122 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 ARMC3Q5W041 872 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 OPN5Q6U736 354 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 LMNTD2Q8IXW0 634 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.73■□□□□ 0.593e-9■■■□□ 18.1
SQSTM1-215ENST00000514093 FBXW8Q8N3Y1 598 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 MORN4Q8NDC4 146 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 CCT6BQ92526 530 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 DAZLQ92904 295 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 GAL3ST3Q96A11 431 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 BAG1Q99933 345 aaPredicted RBP18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 NPLQ9BXD5 320 aaPredicted RBP18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 ALOXE3Q9BYJ1 711 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 TRIM54Q9BYV2 358 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 IKZF3Q9UKT9 509 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 SLC22A14Q9Y267 594 aa18.73■□□□□ 0.59
SQSTM1-215ENST00000514093 CLCA1A8K7I4 914 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 GABRB3P28472 473 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 CEACAM8P31997 349 aaPredicted RBP18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 MAGEA6P43360 314 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 PLA2G16P53816 162 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 AP1S2P56377 157 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 ASPHQ12797 758 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 PRAMEF20Q5VT98 475 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 ADGRD1Q6QNK2 874 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 ZNF595Q8IYB9 648 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 KLHDC8AQ8IYD2 350 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 SLC2A12Q8TD20 617 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 ATL1Q8WXF7 558 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 MS4A6EQ96DS6 147 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 SERPINB12Q96P63 405 aa18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 ZNF703Q9H7S9 590 aaPredicted RBP18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 MRPS33Q9Y291 106 aaKnown RBP18.72■□□□□ 0.59
SQSTM1-215ENST00000514093 A0A1W2PPR1 153 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 C17orf105B2RV13 164 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 CYR61O00622 381 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 B3GALT2O43825 422 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 EPPINO95925 133 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 FGGP02679 453 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 ZNF136P52737 540 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 IL2P60568 153 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 KCNJ2P63252 427 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 ACSF3Q4G176 576 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 SHEQ5VZ18 495 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 RNF10Q8N5U6 811 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 C2CD4AQ8NCU7 369 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 OR5L2Q8NGL0 311 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 OR14A16Q8NHC5 309 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 NEIL3Q8TAT5 605 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 JSRP1Q96MG2 331 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 QRFPRQ96P65 431 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 YIPF4Q9BSR8 244 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 FAM167BQ9BTA0 163 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 HOMER3Q9NSC5 361 aa18.71■□□□□ 0.59
SQSTM1-215ENST00000514093 BEX4Q9NWD9 120 aaPredicted RBP18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms