RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 LRRC61Q9BV99 259 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ERVK-6Q9BXR3 956 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 TRIM15Q9C019 465 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ZDHHC5Q9C0B5 715 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 TIGARQ9NQ88 270 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 REV1Q9UBZ9 1251 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 POLHQ9Y253 713 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 CEP250Q9BV73 2442 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 FEZF1A0PJY2 475 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 LOC110117498-PIK3R3F6TDL0 507 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 DYRK3O43781 588 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 PRAMEF10O60809 474 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 WBP4O75554 376 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 C1orf105O95561 183 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 GBAP04062 536 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 SDHBP21912 280 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC19A1P41440 591 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 KRT6CP48668 564 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 CCR5P51681 352 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 SH3BP2P78314 561 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 HHEXQ03014 270 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 PWP1Q13610 501 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 RPE65Q16518 533 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 GPRIN3Q6ZVF9 776 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 P2RY8Q86VZ1 359 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 THOC6Q86W42 341 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 OR8H3Q8N146 312 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 RAB42Q8N4Z0 105 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 GLB1L3Q8NCI6 653 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 OR4F6Q8NGB9 312 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 OR52E1Q8NGJ3 308 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 OR9A1PQ8NGU1 263 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 CLHC1Q8NHS4 586 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 NUDT8Q8WV74 236 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 CCDC126Q96EE4 140 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 ELOVL6Q9H5J4 265 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 RNF167Q9H6Y7 350 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 EML4Q9HC35 981 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 ZBTB26Q9HCK0 441 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 FARSBQ9NSD9 589 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 NUDT4Q9NZJ9 180 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC17A4Q9Y2C5 497 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 RAP2CQ9Y3L5 183 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 NUP214P35658 2090 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 CFAP54Q96N23 3096 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 RALGAPA1Q6GYQ0 2036 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 RHPN2P1A8MT19 583 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 E7EQ34 232 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 BTN3A3O00478 584 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 YY2O15391 372 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 NOS1APO75052 506 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 JRKO75564 520 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 IMPDH1P20839 514 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 MTPNP58546 118 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 GPLD1P80108 840 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 NR6A1Q15406 480 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 DEFB110Q30KQ9 67 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 METRNLQ641Q3 311 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 STEAP3Q658P3 488 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 ADNP2Q6IQ32 1131 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 TBPL2Q6SJ96 375 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 PDZD3Q86UT5 571 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 HIPK1Q86Z02 1210 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 EID2Q8N6I1 236 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF740Q8NDX6 193 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 DENND6BQ8NEG7 585 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 RDH11Q8TC12 318 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 SLCO4A1Q96BD0 722 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 RHBDF1Q96CC6 855 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 FCRL4Q96PJ5 515 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 MROQ9BYG7 248 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 POPDC3Q9HBV1 291 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 ZBTB20Q9HC78 741 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 ANAPC2Q9UJX6 822 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 OARD1Q9Y530 152 aa8.29□□□□□ -1.08
LIMCH1-209ENST00000509277 TAPBPO15533 448 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 LILRB5O75023 590 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 FAM20BO75063 409 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SLCO2B1O94956 709 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 RPN2P04844 631 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 FHP07954 510 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 INPP1P49441 399 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 HTR6P50406 440 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 NUDT6P53370 316 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 HNRNPKP61978 463 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 BCL2A1Q16548 175 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SMN1Q16637 294 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CAPN13Q6MZZ7 669 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ERMP1Q7Z2K6 904 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF438Q7Z4V0 828 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 EPHX4Q8IUS5 362 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 DCUN1D3Q8IWE4 304 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 MFSD2AQ8NA29 543 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SELENOMQ8WWX9 145 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CAMK1GQ96NX5 476 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ALOXE3Q9BYJ1 711 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 DUSP15Q9H1R2 295 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 RANGRFQ9HD47 186 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC35C2Q9NQQ7 365 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 DNAJC11Q9NVH1 559 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms