RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 ARHGAP1Q07960 439 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 LYPLAL1Q5VWZ2 237 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 ZNF776Q68DI1 518 aaPredicted RBP4□□□□□ -1.77
HMGB1P38-201ENST00000490557 TMEM64Q6YI46 380 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 P2RY8Q86VZ1 359 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 KLHDC8AQ8IYD2 350 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 Q8N377 158 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 AMER3Q8N944 861 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 ANKRD20A12PQ8NF67 263 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 ZDHHC19Q8WVZ1 309 aaPredicted RBP4□□□□□ -1.77
HMGB1P38-201ENST00000490557 PTP4A1Q93096 173 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 SLC35C1Q96A29 364 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 PDLIM5Q96HC4 596 aaKnown RBP4□□□□□ -1.77
HMGB1P38-201ENST00000490557 C16orf45Q96MC5 204 aaPredicted RBP4□□□□□ -1.77
HMGB1P38-201ENST00000490557 TRIM6Q9C030 488 aaPredicted RBP4□□□□□ -1.77
HMGB1P38-201ENST00000490557 TNMDQ9H2S6 317 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 THAP9Q9H5L6 903 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 HEXA-AS1Q9H8Q6 139 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 S100A14Q9HCY8 104 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 THAP10Q9P2Z0 257 aaPredicted RBP4□□□□□ -1.77
HMGB1P38-201ENST00000490557 CTSZQ9UBR2 303 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 HOOK1Q9UJC3 728 aaKnown RBP4□□□□□ -1.77
HMGB1P38-201ENST00000490557 DUSP12Q9UNI6 340 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 SH3GLB1Q9Y371 365 aa4□□□□□ -1.77
HMGB1P38-201ENST00000490557 MAGEB16A2A368 324 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 A4D1N5 150 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 FAM149AA5PLN7 773 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 KRT87PA6NCN2 255 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ZNF749O43361 778 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 TXNL1O43396 289 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ZBTB14O43829 449 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 GLCEO94923 617 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 FGF19O95750 216 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 SLC16A8O95907 504 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 KRT13P13646 458 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 EZRP15311 586 aaKnown RBP3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ACKR3P25106 362 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 TCF7P36402 384 aaPredicted RBP3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 CLCN4P51793 760 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 RIDAP52758 137 aaKnown RBP3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 CRYBA2P53672 197 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 RBBP4Q09028 425 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 NFE2L1Q14494 772 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 C3AR1Q16581 482 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ECSCRQ19T08 205 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 SMU1Q2TAY7 513 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ANKDD1AQ495B1 522 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ZNF789Q5FWF6 425 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 AGAP6Q5VW22 663 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 SIGLEC15Q6ZMC9 328 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ZNF841Q6ZN19 808 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 LINC00696Q6ZRV3 163 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 CCDC83Q8IWF9 413 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ABHD12Q8N2K0 398 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 GANCQ8TET4 914 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ULK4Q96C45 1275 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 AP2M1Q96CW1 435 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ANKRD27Q96NW4 1050 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 TMEM237Q96Q45 408 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 RASL10BQ96S79 203 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ZNF559Q9BR84 538 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 RAB11FIP5Q9BXF6 653 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 LRRC2Q9BYS8 371 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 JPT2Q9H910 190 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 AKAP7Q9P0M2 348 aaPredicted RBP3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ZNF319Q9P2F9 582 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 RABL2AQ9UBK7 228 aaPredicted RBP3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 PILRAQ9UKJ1 303 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ETV7Q9Y603 341 aa3.99□□□□□ -1.77
HMGB1P38-201ENST00000490557 ACOD1A6NK06 481 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 A8MU76 341 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 OGTO15294 1046 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 SKILP12757 684 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 GATA1P15976 413 aaPredicted RBP3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 CAPN2P17655 700 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 NDUFV3P56181 108 aaKnown RBP3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 PEX3P56589 373 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 ACTN3Q08043 901 aaPredicted RBP3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 CD300CQ08708 224 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 LRRC74AQ0VAA2 488 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 MORF4L2Q15014 288 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 TYSND1Q2T9J0 566 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 KBTBD12Q3ZCT8 623 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 KCNMB4Q86W47 210 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 SIAH3Q8IW03 269 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 TBC1D21Q8IYX1 336 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 TAF15Q92804 592 aaKnown RBP eCLIP3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 RBM18Q96H35 190 aaKnown RBP3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 CCM2Q9BSQ5 444 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 PINK1Q9BXM7 581 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 FUT8Q9BYC5 575 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 NAPBQ9H115 298 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 PNNQ9H307 717 aaKnown RBP3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 FNDC4Q9H6D8 234 aaPredicted RBP3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 MOB1AQ9H8S9 216 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 WDR41Q9HAD4 459 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 PLEKHA3Q9HB20 300 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 IL1RAPQ9NPH3 570 aa3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 MRPL17Q9NRX2 175 aaKnown RBP3.98□□□□□ -1.77
HMGB1P38-201ENST00000490557 MED17Q9NVC6 651 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms