RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 GPR180Q86V85 440 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 CA13Q8N1Q1 262 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 DEPDC4Q8N2C3 294 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 ENDOVQ8N8Q3 282 aaKnown RBP9.72□□□□□ -0.85
SKA1-204ENST00000488454 FNDC5Q8NAU1 212 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 OR5T3Q8NGG3 340 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 STT3BQ8TCJ2 826 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 NANOS1Q8WY41 292 aaKnown RBP9.72□□□□□ -0.85
SKA1-204ENST00000488454 OR1F2PQ96R84 312 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 FAIM2Q9BWQ8 316 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 CCDC134Q9H6E4 229 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 WDR54Q9H977 334 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 SLC22A11Q9NSA0 550 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 C14orf105Q9NVL8 296 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 MCM8Q9UJA3 840 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 FBXW2Q9UKT8 454 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 DAPP1Q9UN19 280 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 EIF3LQ9Y262 564 aaKnown RBP9.72□□□□□ -0.85
SKA1-204ENST00000488454 PTRH2Q9Y3E5 179 aaKnown RBP9.72□□□□□ -0.85
SKA1-204ENST00000488454 CCL27Q9Y4X3 112 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 PTGDR2Q9Y5Y4 395 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 USH1CQ9Y6N9 552 aa9.72□□□□□ -0.85
SKA1-204ENST00000488454 A0A0A6YYD5 115 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 TMEM8BA6NDV4 472 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 C4orf51C9J302 202 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 NPIPB8E9PQR5 432 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 LSM1O15116 133 aaKnown RBP9.71□□□□□ -0.86
SKA1-204ENST00000488454 TLX3O43711 291 aaPredicted RBP9.71□□□□□ -0.86
SKA1-204ENST00000488454 EDF1O60869 148 aaKnown RBP9.71□□□□□ -0.86
SKA1-204ENST00000488454 DIAPH2O60879 1101 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 B4GALT2O60909 372 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 DNAJB6O75190 326 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 SCELO95171 688 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 BMP10O95393 424 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 FHP07954 510 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 ANXA4P09525 319 aaPredicted RBP9.71□□□□□ -0.86
SKA1-204ENST00000488454 TROVE2P10155 538 aaKnown RBP eCLIP9.71□□□□□ -0.86
SKA1-204ENST00000488454 TIA1P31483 386 aaKnown RBP eCLIP9.71□□□□□ -0.86
SKA1-204ENST00000488454 FOLR3P41439 243 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 GSTM5P46439 218 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 EMP2P54851 167 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 TRA2BP62995 288 aaKnown RBP9.71□□□□□ -0.86
SKA1-204ENST00000488454 RPL38P63173 70 aaKnown RBP9.71□□□□□ -0.86
SKA1-204ENST00000488454 MAD2L1Q13257 205 aaPredicted RBP9.71□□□□□ -0.86
SKA1-204ENST00000488454 NKG7Q16617 165 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 TUBB8Q3ZCM7 444 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 RFTN2Q52LD8 501 aaPredicted RBP9.71□□□□□ -0.86
SKA1-204ENST00000488454 VWA2Q5GFL6 755 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 XKR7Q5GH72 579 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 NXNQ6DKJ4 435 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 NOXRED1Q6NXP6 359 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 FAM198BQ6UWH4 519 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 ACAD11Q709F0 780 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 COX15Q7KZN9 410 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 PRSS58Q8IYP2 241 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 ZSCAN1Q8NBB4 408 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 C7orf57Q8NEG2 295 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 OR2T11Q8NH01 316 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 METTL21AQ8WXB1 218 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 C3orf30Q96M34 536 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 MAPKAP1Q9BPZ7 522 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 TRIM55Q9BYV6 548 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 TGIF2Q9GZN2 237 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 SLC26A1Q9H2B4 701 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 SOX17Q9H6I2 414 aaPredicted RBP9.71□□□□□ -0.86
SKA1-204ENST00000488454 AKTIPQ9H8T0 292 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 MEAF6Q9HAF1 191 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 SIRT5Q9NXA8 310 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 CTSFQ9UBX1 484 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 PSME2Q9UL46 239 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 MKL2Q9ULH7 1088 aa9.71□□□□□ -0.86
SKA1-204ENST00000488454 IGLV3-12A0A075B6K2 115 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 GOLGA8QA0A0J9YX86 632 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 BLACEA4D250 179 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 GOLGA8OA6NCC3 632 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 VSTM2BA6NLU5 285 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 FAM227AF5H4B4 570 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 GOLGA8NF8WBI6 632 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 PROM1O43490 865 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 TMPRSS11DO60235 418 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 PRMT3O60678 531 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 CREG1O75629 220 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 CDC123O75794 336 aaPredicted RBP9.7□□□□□ -0.86
SKA1-204ENST00000488454 IGHEP01854 428 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 LIFP15018 202 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 LBPP18428 481 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 TPP2P29144 1249 aaPredicted RBP9.7□□□□□ -0.86
SKA1-204ENST00000488454 EIF2S3P41091 472 aaKnown RBP9.7□□□□□ -0.86
SKA1-204ENST00000488454 GYS2P54840 703 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 AQP5P55064 265 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 TAS2R50P59544 299 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 GNGT1P63211 74 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 MC1RQ01726 317 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 EMX2Q04743 252 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 SLC13A2Q13183 592 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 ERV3-1Q14264 604 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 SSPNQ14714 243 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 HEPACAMQ14CZ8 416 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 KIAA0040Q15053 153 aa9.7□□□□□ -0.86
SKA1-204ENST00000488454 SMU1Q2TAY7 513 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms