RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 RALAP11233 206 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 MYOGP15173 224 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 PRDX6P30041 224 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 FEN1P39748 380 aaKnown RBP4.5□□□□□ -1.69
UPF3B-203ENST00000478840 PMP22Q01453 160 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 FUT7Q11130 342 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 TMEM132DQ14C87 1099 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 EXOSC7Q15024 291 aaKnown RBP4.5□□□□□ -1.69
UPF3B-203ENST00000478840 EFTUD2Q15029 972 aaKnown RBP eCLIP4.5□□□□□ -1.69
UPF3B-203ENST00000478840 ANKDD1AQ495B1 522 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 ZNF672Q499Z4 452 aaPredicted RBP4.5□□□□□ -1.69
UPF3B-203ENST00000478840 GPAT3Q53EU6 434 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 SPANXN4Q5MJ08 99 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 IL23RQ5VWK5 629 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 AFTPHQ6ULP2 937 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 YRDCQ86U90 279 aaKnown RBP4.5□□□□□ -1.69
UPF3B-203ENST00000478840 SLC22A16Q86VW1 577 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 CACUL1Q86Y37 369 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 LRRC17Q8N6Y2 441 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 GPRC5AQ8NFJ5 357 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 IPMKQ8NFU5 416 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 OR4D10Q8NGI6 311 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 OR52B4Q8NGK2 314 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 SMPDL3AQ92484 453 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 SUSD6Q92537 303 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 ZNF524Q96C55 264 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 RPGRIP1Q96KN7 1286 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 ERGIC2Q96RQ1 377 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 CTAGE1Q96RT6 745 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 S100A14Q9HCY8 104 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 HPS4Q9NQG7 708 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 TECRQ9NZ01 308 aaKnown RBP4.5□□□□□ -1.69
UPF3B-203ENST00000478840 VPS54Q9P1Q0 977 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 CGNQ9P2M7 1197 aaKnown RBP4.5□□□□□ -1.69
UPF3B-203ENST00000478840 OR1A2Q9Y585 309 aa4.5□□□□□ -1.69
UPF3B-203ENST00000478840 RNF123Q5XPI4 1314 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 A0A087WZY1 265 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 A0A0G2JLW4 131 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 BMPR1BO00238 502 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 GRID2O43424 1007 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 CSDE1O75534 798 aaKnown RBP4.49□□□□□ -1.69
UPF3B-203ENST00000478840 KRT8P05787 483 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 HIST1H2AGP0C0S8 130 aaPredicted RBP4.49□□□□□ -1.69
UPF3B-203ENST00000478840 TPBGLP0DKB5 382 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 NCF1P14598 390 aaPredicted RBP4.49□□□□□ -1.69
UPF3B-203ENST00000478840 GNSP15586 552 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 GPX3P22352 226 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 HSPA1LP34931 641 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 SOX3P41225 446 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 LEPRP48357 1165 aaKnown RBP4.49□□□□□ -1.69
UPF3B-203ENST00000478840 LBX1P52954 281 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 DLX5P56178 289 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 GUCY2DQ02846 1103 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 RBBP5Q15291 538 aaKnown RBP4.49□□□□□ -1.69
UPF3B-203ENST00000478840 C3AR1Q16581 482 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 ZSWIM7Q19AV6 140 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 ZNF585BQ52M93 769 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 TMEM26Q6ZUK4 368 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 MCM10Q7L590 875 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.49□□□□□ -1.69
UPF3B-203ENST00000478840 DND1Q8IYX4 353 aaKnown RBP4.49□□□□□ -1.69
UPF3B-203ENST00000478840 SLC22A15Q8IZD6 547 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 CERS5Q8N5B7 392 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 BCORP1Q8N888 145 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 CCDC197Q8NCU1 140 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 OR5T2Q8NGG2 359 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 GOLGA5Q8TBA6 731 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 HIST1H2ACQ93077 130 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 DTNBP1Q96EV8 351 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 VPS39Q96JC1 886 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 C2orf48Q96LS8 159 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 GPA33Q99795 319 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 WACQ9BTA9 647 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 FUNDC2Q9BWH2 189 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 PAPOLGQ9BWT3 736 aaKnown RBP4.49□□□□□ -1.69
UPF3B-203ENST00000478840 WWP1Q9H0M0 922 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 ROPN1Q9HAT0 212 aaPredicted RBP4.49□□□□□ -1.69
UPF3B-203ENST00000478840 SLC52A3Q9NQ40 469 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 KCNG2Q9UJ96 466 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 MRTO4Q9UKD2 239 aaKnown RBP4.49□□□□□ -1.69
UPF3B-203ENST00000478840 DIMT1Q9UNQ2 313 aaKnown RBP4.49□□□□□ -1.69
UPF3B-203ENST00000478840 DOCK7Q96N67 2140 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 ATAD2BQ9ULI0 1458 aa4.49□□□□□ -1.69
UPF3B-203ENST00000478840 IGHV4-4A0A075B6R2 117 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 hCG_38984A0A1B0GV85 526 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 IKBKBO14920 756 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 CHADO15335 359 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 ECE2O60344 883 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 CDC123O75794 336 aaPredicted RBP4.48□□□□□ -1.69
UPF3B-203ENST00000478840 HSPA5P11021 654 aaKnown RBP4.48□□□□□ -1.69
UPF3B-203ENST00000478840 EDNRAP25101 427 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 TIMP3P35625 211 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 LIMK2P53671 638 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 NLRP11P59045 1033 aaKnown RBP4.48□□□□□ -1.69
UPF3B-203ENST00000478840 TRA2BP62995 288 aaKnown RBP4.48□□□□□ -1.69
UPF3B-203ENST00000478840 MYBPC1Q00872 1141 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 ZNF528Q3MIS6 628 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 GTDC1Q4AE62 458 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 AGKQ53H12 422 aa4.48□□□□□ -1.69
UPF3B-203ENST00000478840 CMPK2Q5EBM0 449 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms