RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MACROD1Q9BQ69 325 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 MESP1Q9BRJ9 268 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 ERP44Q9BS26 406 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 TUBB6Q9BUF5 446 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 SARGQ9BW04 601 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 VN1R1Q9GZP7 353 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 ZNF700Q9H0M5 742 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 DPH5Q9H2P9 285 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 RHOJQ9H4E5 214 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 PELI2Q9HAT8 420 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 SAYSD1Q9NPB0 183 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 AGPAT4Q9NRZ5 378 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 ASF1BQ9NVP2 202 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 HCN3Q9P1Z3 774 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 PTGFRNQ9P2B2 879 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 TXNDC16Q9P2K2 825 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 CTNNAL1Q9UBT7 734 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 C19orf25Q9UFG5 118 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 IKZF3Q9UKT9 509 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 UTP11Q9Y3A2 253 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 NAALAD2Q9Y3Q0 740 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 OARD1Q9Y530 152 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 CSAG2Q9Y5P2 127 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 COPG1Q9Y678 874 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 SLC22A7Q9Y694 548 aa6.41□□□□□ -1.38
CCDC88A-213ENST00000476903 SPTBN1Q01082 2364 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 BLACEA4D250 179 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 URADA6NGE7 173 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 CDC7O00311 574 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 TPD52L2O43399 206 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 RAD51CO43502 376 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 RDH16O75452 317 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 JRKO75564 520 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 KLHL18O94889 574 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 SERPIND1P05546 499 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 GSTA2P09210 222 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 TACR1P25103 407 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 SSTR1P30872 391 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 AHRP35869 848 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 XCR1P46094 333 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 MRPS25P82663 173 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 REEP5Q00765 189 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 POU4F1Q01851 419 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 CAV1Q03135 178 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 RGS1Q08116 209 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 ZNF460Q14592 562 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 PCOLCEQ15113 449 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 CATSPEREQ5SY80 951 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 CYS1Q717R9 158 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 ABHD13Q7L211 337 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 CPEB2Q7Z5Q1 589 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 TMPRSS11BQ86T26 416 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 ADAMTSL2Q86TH1 951 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 THOC6Q86W42 341 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 PDSS2Q86YH6 399 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 CEP97Q8IW35 865 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 AFAP1L2Q8N4X5 818 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 SIRT6Q8N6T7 355 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 ZNF740Q8NDX6 193 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 NT5CQ8TCD5 201 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 SSC4DQ8WTU2 575 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 ANKRD49Q8WVL7 239 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 TSNARE1Q96NA8 513 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 OR1F2PQ96R84 312 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 CYTH2Q99418 400 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 BARD1Q99728 777 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 CPNE1Q99829 537 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 AIF1LQ9BQI0 150 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 MCMBPQ9BTE3 642 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 DERL2Q9GZP9 239 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 RAB17Q9H0T7 212 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 IGSF5Q9NSI5 407 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 GRHL1Q9NZI5 618 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 FBLN5Q9UBX5 448 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 TEKT2Q9UIF3 430 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 ZFP69BQ9UJL9 534 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 SLC22A14Q9Y267 594 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 KCNE2Q9Y6J6 123 aa6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.4□□□□□ -1.38
CCDC88A-213ENST00000476903 USP9XQ93008 2570 aaPredicted RBP6.4□□□□□ -1.39
CCDC88A-213ENST00000476903 DIDO1Q9BTC0 2240 aaKnown RBP6.4□□□□□ -1.39
CCDC88A-213ENST00000476903 TRAV17A0A0B4J275 112 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 TCRBV9S1A1TA0A576 114 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 ANKUB1A6NFN9 424 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 ZNF860A6NHJ4 632 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 FAM159BA6NKW6 160 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 CXorf49A8MYA2 514 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 GALR3O60755 368 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 CDC123O75794 336 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 PIAS1O75925 651 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 SEC24DO94855 1032 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 WDR47O94967 919 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 CBX6O95503 412 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 DDAH2O95865 285 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 CELA2AP08217 269 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 ZNF888P0CJ79 500 aaPredicted RBP6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 MYBL2P10244 700 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 ITGAMP11215 1152 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 GP1BBP13224 206 aa6.39□□□□□ -1.39
CCDC88A-213ENST00000476903 STMN1P16949 149 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms