RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 ACOT4Q8N9L9 421 aa17.81■□□□□ 0.44
COL7A1-207ENST00000467985 TMEM52Q8NDY8 209 aa17.81■□□□□ 0.44
COL7A1-207ENST00000467985 THAP3Q8WTV1 239 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-207ENST00000467985 DAZLQ92904 295 aaKnown RBP17.81■□□□□ 0.44
COL7A1-207ENST00000467985 REPS1Q96D71 796 aa17.81■□□□□ 0.44
COL7A1-207ENST00000467985 KCMF1Q9P0J7 381 aa17.81■□□□□ 0.44
COL7A1-207ENST00000467985 PCDHGA11Q9Y5H2 935 aa17.81■□□□□ 0.44
COL7A1-207ENST00000467985 CLDN16Q9Y5I7 305 aa17.81■□□□□ 0.44
COL7A1-207ENST00000467985 CLCA3PQ9Y6N3 262 aa17.81■□□□□ 0.44
COL7A1-207ENST00000467985 TGFBR3LH3BV60 316 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 KLK8O60259 260 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 NME2P1O60361 137 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 UGDHO60701 494 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 IFNA16P05015 189 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 NME2P22392 152 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 HIST1H1TP22492 207 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-207ENST00000467985 SSR2P43308 183 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 SERPINB9P50453 376 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 ARFIP1P53367 373 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 CASP6P55212 293 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 PHEXP78562 749 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 SERTAD2Q14140 314 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 PCBP2Q15366 365 aaKnown RBP eCLIP17.8■□□□□ 0.44
COL7A1-207ENST00000467985 ZRSR2Q15696 482 aaKnown RBP17.8■□□□□ 0.44
COL7A1-207ENST00000467985 MAPKAPK3Q16644 382 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 DEPDC1Q5TB30 811 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 ZNF468Q5VIY5 522 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-207ENST00000467985 KHDRBS2Q5VWX1 349 aaKnown RBP17.8■□□□□ 0.44
COL7A1-207ENST00000467985 HIST2H2BCQ6DN03 193 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 MTFR2Q6P444 385 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 GALNTL5Q7Z4T8 443 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 SLC44A1Q8WWI5 657 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 FRMD6Q96NE9 622 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 GPR78Q96P69 363 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 CSF3RQ99062 836 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 HES7Q9BYE0 225 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 VPS11Q9H270 941 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 CDC42EP4Q9H3Q1 356 aaKnown RBP17.8■□□□□ 0.44
COL7A1-207ENST00000467985 ACTR8Q9H981 624 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 SUCOQ9UBS9 1254 aaKnown RBP17.8■□□□□ 0.44
COL7A1-207ENST00000467985 VTI1BQ9UEU0 232 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 FBXW2Q9UKT8 454 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 TMCO1Q9UM00 188 aa17.8■□□□□ 0.44
COL7A1-207ENST00000467985 KRT38O76015 456 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 ZFAND5O76080 213 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 ACSL3O95573 720 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 TGFB1P01137 390 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 CNTFP26441 200 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 TNFRSF8P28908 595 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 PPP2R1BP30154 601 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 GPR143P51810 404 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 RAP1GDS1P52306 607 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 ZNF793Q6ZN11 406 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-207ENST00000467985 CLNKQ7Z7G1 428 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 MYLK4Q86YV6 388 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-207ENST00000467985 GSPT2Q8IYD1 628 aaKnown RBP17.79■□□□□ 0.44
COL7A1-207ENST00000467985 TMEM156Q8N614 296 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 POGLUT1Q8NBL1 392 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 MORN4Q8NDC4 146 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 OR14A16Q8NHC5 309 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 NCLNQ969V3 563 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 ISL2Q96A47 359 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 RGMAQ96B86 450 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 GPR137Q96N19 417 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 ALOXE3Q9BYJ1 711 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 MS4A12Q9NXJ0 267 aa17.79■□□□□ 0.44
COL7A1-207ENST00000467985 KLF13Q9Y2Y9 288 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-207ENST00000467985 YARS2Q9Y2Z4 477 aaKnown RBP17.79■□□□□ 0.44
COL7A1-207ENST00000467985 TRGV8A0A0C4DH27 118 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 H0YIV9 168 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 ZG16O60844 167 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 TUBBP07437 444 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 RBP1P09455 135 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 PTX3P26022 381 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-207ENST00000467985 CA7P43166 264 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 ST13P50502 369 aaKnown RBP17.78■□□□□ 0.44
COL7A1-207ENST00000467985 BIKQ13323 160 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 DDX39BQ13838 428 aaKnown RBP17.78■□□□□ 0.44
COL7A1-207ENST00000467985 GTF2H2Q13888 395 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 OR4C11Q6IEV9 310 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 GTF2H2CQ6P1K8 395 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 HSDL2Q6YN16 418 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 EIF1ADQ8N9N8 165 aaKnown RBP17.78■□□□□ 0.44
COL7A1-207ENST00000467985 HUS1BQ8NHY5 278 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 MAGED4Q96JG8 741 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 MAPKAP1Q9BPZ7 522 aa17.78■□□□□ 0.44
COL7A1-207ENST00000467985 CPSF2Q9P2I0 782 aaKnown RBP17.78■□□□□ 0.44
COL7A1-207ENST00000467985 KLRC4-KLRK1H3BQV0 150 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 RTCAO00442 366 aaKnown RBP17.77■□□□□ 0.44
COL7A1-207ENST00000467985 SLC19A2O60779 497 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 ITGA10O75578 1167 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 COL6A2P12110 1019 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 ZNF24P17028 368 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 CPN2P22792 545 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 MAGEA12P43365 314 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 SSR4P51571 173 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 VSNL1P62760 191 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 TSNAXIP1Q2TAA8 658 aa17.77■□□□□ 0.44
COL7A1-207ENST00000467985 TECRLQ5HYJ1 363 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms