RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 NXPE4Q6UWF7 544 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 CLNKQ7Z7G1 428 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 CTAGE6Q86UF2 777 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 CAND1Q86VP6 1230 aaKnown RBP13.37□□□□□ -0.27
SMC1A-204ENST00000463684 PRIMA1Q86XR5 153 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 LIX1Q8N485 282 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 RNF10Q8N5U6 811 aaKnown RBP13.37□□□□□ -0.27
SMC1A-204ENST00000463684 LRRN4CLQ8ND94 238 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 OR8K3Q8NH51 312 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 GAL3ST3Q96A11 431 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 YIPF4Q9BSR8 244 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 FAM167BQ9BTA0 163 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 REPIN1Q9BWE0 567 aaKnown RBP13.37□□□□□ -0.27
SMC1A-204ENST00000463684 PLEKHF2Q9H8W4 249 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 SEMA4BQ9NPR2 832 aaPredicted RBP13.37□□□□□ -0.27
SMC1A-204ENST00000463684 BEX4Q9NWD9 120 aaPredicted RBP13.37□□□□□ -0.27
SMC1A-204ENST00000463684 SPRR3Q9UBC9 169 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 ATG4BQ9Y4P1 393 aa13.37□□□□□ -0.27
SMC1A-204ENST00000463684 A0A0G2JN53 185 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 KIAA1324LA8MWY0 1029 aaPredicted RBP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 AHRRA9YTQ3 701 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 C4orf51C9J302 202 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 B3GALT2O43825 422 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 H2AFYO75367 372 aaKnown RBP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 GOSR1O95249 250 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 LY6G6DO95868 133 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 IL2RAP01589 272 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 CCL3P10147 92 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 ENDOUP21128 410 aaKnown RBP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 PIGAP37287 484 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 VPS41P49754 854 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 KCNJ2P63252 427 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 RNF4P78317 190 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 TIAL1Q01085 375 aaKnown RBP eCLIP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 TBL3Q12788 808 aaKnown RBP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 STX4Q12846 297 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 GPS1Q13098 491 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 RCN2Q14257 317 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 HSP90AA5PQ58FG0 334 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 SLC22A10Q63ZE4 541 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 TMPRSS11BQ86T26 416 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 THOC6Q86W42 341 aaKnown RBP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 FAM47BQ8NA70 645 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 TMEM52Q8NDY8 209 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 TNIP2Q8NFZ5 429 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 OR14A16Q8NHC5 309 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 GABPB2Q8TAK5 448 aaPredicted RBP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 PTPMT1Q8WUK0 201 aaPredicted RBP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 CAPZA3Q96KX2 299 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 BAG1Q99933 345 aaPredicted RBP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 ALOXE3Q9BYJ1 711 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 OR8D2Q9GZM6 311 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 XAB2Q9HCS7 855 aaKnown RBP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 IARS2Q9NSE4 1012 aaKnown RBP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 VTI1BQ9UEU0 232 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 BOKQ9UMX3 212 aaPredicted RBP13.36□□□□□ -0.27
SMC1A-204ENST00000463684 CLDN16Q9Y5I7 305 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 KCNE2Q9Y6J6 123 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 AKAP6Q13023 2319 aa13.36□□□□□ -0.27
SMC1A-204ENST00000463684 ZNF407Q9C0G0 2248 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 ERI3O43414 337 aaKnown RBP13.35□□□□□ -0.27
SMC1A-204ENST00000463684 CTNSO60931 367 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 EPPINO95925 133 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 ENO2P09104 434 aaPredicted RBP13.35□□□□□ -0.27
SMC1A-204ENST00000463684 CEACAM8P31997 349 aaPredicted RBP13.35□□□□□ -0.27
SMC1A-204ENST00000463684 MAGEA6P43360 314 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 HNRNPFP52597 415 aaKnown RBP13.35□□□□□ -0.27
SMC1A-204ENST00000463684 PDAP1Q13442 181 aaKnown RBP13.35□□□□□ -0.27
SMC1A-204ENST00000463684 EFTUD2Q15029 972 aaKnown RBP eCLIP13.35□□□□□ -0.273e-6■■■■□ 23.5
SMC1A-204ENST00000463684 KCTD19Q17RG1 926 aaPredicted RBP13.35□□□□□ -0.27
SMC1A-204ENST00000463684 SEM1Q6ZVN7 128 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 KLHDC8AQ8IYD2 350 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 TTLQ8NG68 377 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 SPATA3Q8NHX4 192 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 NEIL3Q8TAT5 605 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 LINC01560Q8TB33 94 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 CCT6BQ92526 530 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 DESI2Q9BSY9 194 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 ZFP64Q9NPA5 681 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 ACKR4Q9NPB9 350 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 HOMER3Q9NSC5 361 aa13.35□□□□□ -0.27
SMC1A-204ENST00000463684 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.34□□□□□ -0.27
SMC1A-204ENST00000463684 MYOCOSA0A1B0GUC4 107 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 CLCA1A8K7I4 914 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 C17orf105B2RV13 164 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 GOLGA8MH3BSY2 632 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 CD53P19397 219 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 PCSK6P29122 969 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 HPDP32754 393 aaPredicted RBP13.34□□□□□ -0.27
SMC1A-204ENST00000463684 TIMP3P35625 211 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 CDKN2DP55273 166 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 SF3B4Q15427 424 aaKnown RBP eCLIP13.34□□□□□ -0.27
SMC1A-204ENST00000463684 PIGGQ5H8A4 983 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 ANKRD22Q5VYY1 191 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 LACC1Q8IV20 430 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 P3H2Q8IVL5 708 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 ZNF321PQ8N8H1 164 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 C2CD4AQ8NCU7 369 aaPredicted RBP13.34□□□□□ -0.27
SMC1A-204ENST00000463684 NAXEQ8NCW5 288 aa13.34□□□□□ -0.27
SMC1A-204ENST00000463684 MCUQ8NE86 351 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms