RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SCTRP47872 440 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 STX1BP61266 288 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 RPL38P63173 70 aaKnown RBP11.49□□□□□ -0.57
PTPRF-208ENST00000437607 HMGCS1Q01581 520 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 RGS1Q08116 209 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 MAD2L1Q13257 205 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-208ENST00000437607 SSPNQ14714 243 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 MYBPC3Q14896 1274 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 SLC9A5Q14940 896 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 GALNTL6Q49A17 601 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 SPDYAQ5MJ70 313 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 DCAF10Q5QP82 559 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 C1orf189Q5VU69 101 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 MLIPQ5VWP3 458 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 RHBDD2Q6NTF9 364 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 MRPL14Q6P1L8 145 aaKnown RBP11.49□□□□□ -0.57
PTPRF-208ENST00000437607 RNF44Q7L0R7 432 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 PPP1R32Q7Z5V6 425 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 PLD3Q8IV08 490 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 GALNT16Q8N428 558 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 ZNF655Q8N720 491 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-208ENST00000437607 FNDC5Q8NAU1 212 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 CEP70Q8NHQ1 597 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 RERGQ96A58 199 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-208ENST00000437607 ZUFSPQ96AP4 578 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 MTFMTQ96DP5 389 aaKnown RBP11.49□□□□□ -0.57
PTPRF-208ENST00000437607 THAP11Q96EK4 314 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 OR52B2Q96RD2 323 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 SERPINI1Q99574 410 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 ZFYVE21Q9BQ24 234 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 SLC7A5P2Q9GIP4 190 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 KCNK13Q9HB14 408 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 LRTM1Q9HBL6 345 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 NMRK1Q9NWW6 199 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 B3GNT3Q9Y2A9 372 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 PADI2Q9Y2J8 665 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 PTRH2Q9Y3E5 179 aaKnown RBP11.49□□□□□ -0.57
PTPRF-208ENST00000437607 TSC22D4Q9Y3Q8 395 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 SERTM1A2A2V5 107 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 MAGEB17A8MXT2 336 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 FOXE1O00358 373 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-208ENST00000437607 LSM1O15116 133 aaKnown RBP11.48□□□□□ -0.57
PTPRF-208ENST00000437607 NDUFS4O43181 175 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 OR2B3O76000 313 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 UMODP07911 640 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 HBQ1P09105 142 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 LBPP18428 481 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 AGXTP21549 392 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 MAPK1P28482 360 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 NEK2P51955 445 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 RAP1GDS1P52306 607 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 SOX8P57073 446 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 RPS13P62277 151 aaKnown RBP11.48□□□□□ -0.57
PTPRF-208ENST00000437607 ACSM2AQ08AH3 577 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 LSM12Q3MHD2 195 aaKnown RBP11.48□□□□□ -0.57
PTPRF-208ENST00000437607 ZC3H12BQ5HYM0 836 aaKnown RBP11.48□□□□□ -0.57
PTPRF-208ENST00000437607 ACSM2BQ68CK6 577 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 FCRL6Q6DN72 434 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 ADNP2Q6IQ32 1131 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 Q6ZS92 163 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 TRIM46Q7Z4K8 759 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 ANKRD53Q8N9V6 530 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 MFSD9Q8NBP5 474 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 TRPV3Q8NET8 790 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 OR2Y1Q8NGV0 311 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 OR2T11Q8NH01 316 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 N4BP2L2Q92802 583 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-208ENST00000437607 CMTM7Q96FZ5 175 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 C3orf30Q96M34 536 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 IP6K3Q96PC2 410 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 SARGQ9BW04 601 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 CHRNA10Q9GZZ6 450 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 RHBGQ9H310 441 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 AKTIPQ9H8T0 292 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 SLC22A11Q9NSA0 550 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 MRGBPQ9NV56 204 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 P4HTMQ9NXG6 502 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-208ENST00000437607 DHCR7Q9UBM7 475 aaKnown RBP11.48□□□□□ -0.57
PTPRF-208ENST00000437607 ZFP69BQ9UJL9 534 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 PPT2Q9UMR5 302 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 SLC5A6Q9Y289 635 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 PCDHGA10Q9Y5H3 936 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 CSAG2Q9Y5P2 127 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 SCN2AQ99250 2005 aa11.48□□□□□ -0.57
PTPRF-208ENST00000437607 PCNX1Q96RV3 2341 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 A0A0J9YVX5 310 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 ANKUB1A6NFN9 424 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 UBDO15205 165 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 CCDC22O60826 627 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 PEX11AO75192 247 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 CLEC3AO75596 197 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 SEMA3DO95025 777 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 ATXN8OSP0DMR3 200 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 NCF2P19878 526 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-208ENST00000437607 ITGAXP20702 1163 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 FOLR3P41439 243 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 GCGRP47871 477 aa11.47□□□□□ -0.57
PTPRF-208ENST00000437607 STXBP1P61764 594 aaKnown RBP11.47□□□□□ -0.57
PTPRF-208ENST00000437607 ERVK-8P63133 956 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms