RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 KIAA0907Q7Z7F0 614 aaPredicted RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 THOC6Q86W42 341 aaKnown RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 CRTAC1Q9NQ79 661 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 PRODH2Q9UF12 536 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 CYP8B1Q9UNU6 501 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 HLA-HP01893 362 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TFP02787 698 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 PAX6P26367 422 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 HLFQ16534 295 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 CHRFAM7AQ494W8 412 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 OR5T1Q8NG75 326 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 SMPDL3AQ92484 453 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 CORO2AQ92828 525 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 FCRL1Q96LA6 429 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TSSK3Q96PN8 268 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 LOC285095A0A1B0GVY8 99 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 SCAMP3O14828 347 aaKnown RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 STAG3L2P0CL84 134 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 AFF3P51826 1226 aaKnown RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 WDR4P57081 412 aaKnown RBP6.94□□□□□ -1.3
VPS53-204ENST00000437048 H3F3AP84243 136 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 SLC30A6Q6NXT4 461 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 TLDC1Q6P9B6 456 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 RHOXF1Q8NHV9 184 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 DMRTB1Q96MA1 342 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 RANBP9Q96S59 729 aa6.94□□□□□ -1.3
VPS53-204ENST00000437048 RIMS1Q86UR5 1692 aaKnown RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 LACTBL1A8MY62 500 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TGFB1P01137 390 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 CRYBB1P53674 252 aaPredicted RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 GALNT5Q7Z7M9 940 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 REM2Q8IYK8 340 aaPredicted RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 OR6V1Q8N148 313 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 OR2AG1Q9H205 316 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ACSS2Q9NR19 701 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SCML1Q9UN30 329 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TNFRSF10AO00220 468 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SLC25A14O95258 325 aaPredicted RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 NTSR2O95665 410 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ZNF132P52740 706 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ANKRD54Q6NXT1 300 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 GPR142Q7Z601 462 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TMEM145Q8NBT3 493 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 XAGE5Q8WWM1 108 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ULBP1Q9BZM6 244 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TAAR5O14804 337 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 FFAR3O14843 346 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 IRF6O14896 467 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 GPR42O15529 346 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 PIAS1O75925 651 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 DRD2P14416 443 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 PRSS3P35030 304 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 NR0B1P51843 470 aaKnown RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 LUMP51884 338 aaPredicted RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 TSTQ16762 297 aaKnown RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 ATAT1Q5SQI0 421 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ZDHHC5Q9C0B5 715 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 CIPCQ9C0C6 399 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 Q9N2J8 555 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ASAH2Q9NR71 780 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 OR6C6A6NF89 314 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 F5H5P2 479 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 HEXBP07686 556 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 CALCRP30988 508 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 BAMBIQ13145 260 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TMEM35AQ53FP2 167 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TOR1AIP1Q5JTV8 583 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 PLEKHS1Q5SXH7 462 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 AVPI1Q5T686 147 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SLC51BQ86UW2 128 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SYT14Q8NB59 555 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SLAMF9Q96A28 289 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 BIRC7Q96CA5 298 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TRIP11Q15643 1979 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ZNF705EA8MWA4 302 aaPredicted RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 PPP1R2P9O14990 202 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 KLRC2P26717 231 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ARL3P36405 182 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 PRPS1P60891 318 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 TAP2Q03519 686 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 UPP1Q16831 310 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 PAN3Q58A45 887 aaKnown RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 MTURNQ8N3F0 131 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 OR56A3Q8NH54 315 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 GPR151Q8TDV0 419 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 GLYATL1Q969I3 302 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 EMID1Q96A84 441 aaPredicted RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 SAMD11Q96NU1 681 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 NOCTQ9UK39 431 aaKnown RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 SLC7A11Q9UPY5 501 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 GAPDHSO14556 408 aaPredicted RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 DIRAS1O95057 198 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 FARS2O95363 451 aaKnown RBP6.93□□□□□ -1.3
VPS53-204ENST00000437048 CD53P19397 219 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 CPT2P23786 658 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 WNT4P56705 351 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 CHIT1Q13231 466 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 SPCS2Q15005 226 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 IQCHQ86VS3 1027 aa6.93□□□□□ -1.3
VPS53-204ENST00000437048 ABHD11Q8NFV4 315 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms