RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 RNF130Q86XS8 419 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 GPR65Q8IYL9 337 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 CMTM8Q8IZV2 173 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 SLC39A11Q8N1S5 342 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 NATD1Q8N6N6 113 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 OR4K1Q8NGD4 311 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 OR2A12Q8NGT7 310 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 HCAR2Q8TDS4 363 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 C16orf78Q8WTQ4 265 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 SCAMP4Q969E2 229 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 TMEM169Q96HH4 297 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 ZNF558Q96NG5 402 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 SLC30A2Q9BRI3 323 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 BEX2Q9BXY8 128 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 MMP28Q9H239 520 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 DYRK4Q9NR20 520 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 GULP1Q9UBP9 304 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 DSPPQ9NZW4 1301 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 PRAMEF33A0A0G2JMD5 474 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 TMEM202A6NGA9 273 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 LRRTM2O43300 516 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 TSPAN6O43657 245 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 PRAMEF10O60809 474 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 UGT2B17O75795 530 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 ADAP00813 363 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 GASTP01350 101 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 IFNW1P05000 195 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 URODP06132 367 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 CTSAP10619 480 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 NPPBP16860 134 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 UQCRC2P22695 453 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 CSTF2P33240 577 aaKnown RBP eCLIP9.35□□□□□ -0.91
CD44-206ENST00000415148 RECQLP46063 649 aaPredicted RBP9.35□□□□□ -0.91
CD44-206ENST00000415148 CCL23P55773 120 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 CYP4F8P98187 520 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 ILKQ13418 452 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 GPR50Q13585 617 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 MED22Q15528 200 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 TAB1Q15750 504 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 SLC5A12Q1EHB4 618 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 ZNF284Q2VY69 593 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 CCSMST1Q4G0I0 132 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 LRRC73Q5JTD7 316 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 TMEM201Q5SNT2 666 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 SNAP47Q5SQN1 464 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 ZNF770Q6IQ21 691 aaPredicted RBP9.35□□□□□ -0.91
CD44-206ENST00000415148 ZNF544Q6NX49 715 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 DDX53Q86TM3 631 aaKnown RBP9.35□□□□□ -0.91
CD44-206ENST00000415148 OR8H2Q8N162 312 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 RASGEF1AQ8N9B8 481 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 AQP11Q8NBQ7 271 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 CHST14Q8NCH0 376 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 GPR151Q8TDV0 419 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 C17orf50Q8WW18 174 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 GTPBP3Q969Y2 492 aaKnown RBP9.35□□□□□ -0.91
CD44-206ENST00000415148 TMCO6Q96DC7 493 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 PPP1R16AQ96I34 528 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 CEP19Q96LK0 163 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 SAMD11Q96NU1 681 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 WRAP53Q9BUR4 548 aaKnown RBP9.35□□□□□ -0.91
CD44-206ENST00000415148 RIOK2Q9BVS4 552 aaKnown RBP9.35□□□□□ -0.91
CD44-206ENST00000415148 RC3H2Q9HBD1 1191 aaKnown RBP9.35□□□□□ -0.91
CD44-206ENST00000415148 DMRT3Q9NQL9 472 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 DDX28Q9NUL7 540 aaKnown RBP9.35□□□□□ -0.91
CD44-206ENST00000415148 SPG21Q9NZD8 308 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 RHCGQ9UBD6 479 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 ZNF221Q9UK13 617 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 OGDHLQ9ULD0 1010 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 TMA7Q9Y2S6 64 aaKnown RBP9.35□□□□□ -0.91
CD44-206ENST00000415148 DYRK1BQ9Y463 629 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 PCDHGB2Q9Y5G2 931 aa9.35□□□□□ -0.91
CD44-206ENST00000415148 A0A1W2PRB8 838 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 TRBC2A0A5B9 178 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 TFECO14948 347 aaPredicted RBP9.34□□□□□ -0.91
CD44-206ENST00000415148 SLITRK5O94991 958 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 C1orf105O95561 183 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 CKMT1AP12532 417 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 RPS19P39019 145 aaKnown RBP9.34□□□□□ -0.91
CD44-206ENST00000415148 SOX3P41225 446 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 TMEM115Q12893 351 aaPredicted RBP9.34□□□□□ -0.91
CD44-206ENST00000415148 ZNF79Q15937 498 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 MPEG1Q2M385 716 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 REEP3Q6NUK4 255 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 ARMCX6Q7L4S7 300 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 BCDIN3DQ7Z5W3 292 aaKnown RBP9.34□□□□□ -0.91
CD44-206ENST00000415148 TECPR1Q7Z6L1 1165 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 TMPRSS11BQ86T26 416 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 LAX1Q8IWV1 398 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 NRSN1Q8IZ57 195 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 LMNTD1Q8N9Z9 388 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 ZNF480Q8WV37 535 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 ASB15Q8WXK1 588 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 GLYATL1Q969I3 302 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 UBE2E3Q969T4 207 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 FYTTD1Q96QD9 318 aaKnown RBP9.34□□□□□ -0.91
CD44-206ENST00000415148 CNPPD1Q9BV87 410 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 SGPP1Q9BX95 441 aa9.34□□□□□ -0.91
CD44-206ENST00000415148 HMX1Q9NP08 348 aaPredicted RBP9.34□□□□□ -0.91
CD44-206ENST00000415148 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.34□□□□□ -0.91
CD44-206ENST00000415148 FAM8A1Q9UBU6 413 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms