RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 BASP1P80723 227 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 XIAPP98170 497 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PNRC1Q12796 327 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 GAGE2BQ13066 116 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PPIL2Q13356 520 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 FHL1Q13642 323 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 COTL1Q14019 142 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ELAVL3Q14576 367 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 TRIP10Q15642 601 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 TRIP6Q15654 476 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 EIF2S3LQ2VIR3 472 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 GAGE2EQ4V326 116 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 OR7E24Q6IFN5 339 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 GAGE2AQ6NT46 116 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SYT10Q6XYQ8 523 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 TRPM8Q7Z2W7 1104 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ANKRD33Q7Z3H0 272 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 TPRA1Q86W33 373 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PAQR7Q86WK9 346 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CHSY1Q86X52 802 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF683Q8IZ20 524 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 TDHQ8IZJ6 230 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 DSELQ8IZU8 1212 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SYCE1Q8N0S2 351 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CRYBG2Q8N1P7 616 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 FAM47BQ8NA70 645 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 HAVCR1Q96D42 359 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 COQ2Q96H96 371 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ZBED3Q96IU2 234 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 FAM71F1Q96KD3 344 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 VPS35Q96QK1 796 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SIGLEC11Q96RL6 698 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 C19orf43Q9BQ61 176 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SH2D3AQ9BRG2 576 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SPZ1Q9BXG8 430 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PRSS22Q9GZN4 317 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 DNTTIP1Q9H147 329 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 LRRC4Q9HBW1 653 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PDGFCQ9NRA1 345 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ASIC5Q9NY37 505 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ELOVL5Q9NYP7 299 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PDP1Q9P0J1 537 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 KLHL13Q9P2N7 655 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 GAGE2DQ9UEU5 116 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PISDQ9UG56 409 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 OR10H1Q9Y4A9 318 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 RNF115Q9Y4L5 304 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 GRIN2BQ13224 1484 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ABCC10Q5T3U5 1492 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 TRAV26-1A0A087WT03 109 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 TRAV24A0A0B4J272 114 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 MYMKA6NI61 221 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 FOXE1O00358 373 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ABCD4O14678 606 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 RRHO14718 337 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 DFNA5O60443 496 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 NIPSNAP2O75323 286 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 DDNO94850 711 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 NDUFB10O96000 172 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SFTPBP07988 381 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CBSLP0DN79 551 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CETPP11597 493 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 UCP1P25874 307 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CBSP35520 551 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 HTR2BP41595 481 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 RPS5P46782 204 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CSNK1EP49674 416 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 P2RX3P56373 397 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 RPP38P78345 283 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 DR1Q01658 176 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CACNG1Q06432 222 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SLC3A1Q07837 685 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 IL10RBQ08334 325 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 FGL1Q08830 312 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 DMPKQ09013 629 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ILF2Q12905 390 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 DMP1Q13316 513 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 XRCC4Q13426 336 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 VEZF1Q14119 521 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 KEAP1Q14145 624 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 AANATQ16613 207 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 TATDN3Q17R31 274 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 FAM83EQ2M2I3 478 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 HKDC1Q2TB90 917 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SYT14P1Q58G82 188 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF311Q5JNZ3 666 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 LCE1AQ5T7P2 110 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 HHATQ5VTY9 493 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 LIPKQ5VXJ0 399 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ZSCAN25Q6NSZ9 544 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 UGT3A1Q6NUS8 523 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PLXDC2Q6UX71 529 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 Q6ZPB1 254 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CDHR3Q6ZTQ4 885 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ANO5Q75V66 913 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 NKAIN4Q8IVV8 208 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 VSTM4Q8IW00 320 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SFTPA2Q8IWL1 248 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 EFCAB13Q8IY85 973 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms