RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 RPF2Q9H7B2 306 aaKnown RBP9.7□□□□□ -0.86
VPS53-202ENST00000389040 THSD1Q9NS62 852 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 SOHLH2Q9NX45 425 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 UBAP1Q9NZ09 502 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 KLHL3Q9UH77 587 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 TAC3Q9UHF0 121 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 ANAPC2Q9UJX6 822 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 KLK13Q9UKR3 277 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 PLCL2Q9UPR0 1127 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 SATB2Q9UPW6 733 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 DYRK1BQ9Y463 629 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 AK5Q9Y6K8 562 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 AP1M2Q9Y6Q5 423 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 ASXL3Q9C0F0 2248 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 C7orf72A4D263 438 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 FAM149AA5PLN7 773 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 TRABD2BA6NFA1 517 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 EFCAB7A8K855 629 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 E7EQ34 232 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 CLGNO14967 610 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 TPST1O60507 370 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 HBQ1P09105 142 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 ST6GAL1P15907 406 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 SDC1P18827 310 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 CD22P20273 847 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 SOX11P35716 441 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 CCR8P51685 355 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 EMP3P54852 163 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 PPP1CAP62136 330 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 GABREP78334 506 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 CSTF3Q12996 717 aaKnown RBP9.69□□□□□ -0.86
VPS53-202ENST00000389040 KIAA1614Q5VZ46 1190 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 PPP4R4Q6NUP7 873 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 ZBTB49Q6ZSB9 765 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 PPP1R3BQ86XI6 285 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 DNAJC22Q8N4W6 341 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 DTWD1Q8N5C7 304 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 PAPD5Q8NDF8 572 aaKnown RBP9.69□□□□□ -0.86
VPS53-202ENST00000389040 DNAJB8Q8NHS0 232 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 APIPQ96GX9 242 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 CENPNQ96H22 339 aaPredicted RBP9.69□□□□□ -0.86
VPS53-202ENST00000389040 CCDC115Q96NT0 180 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 SLC29A1Q99808 456 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 DPH7Q9BTV6 452 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 PELI2Q9HAT8 420 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 FGF21Q9NSA1 209 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 SLC39A1Q9NY26 324 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.69□□□□□ -0.86
VPS53-202ENST00000389040 CIDEBQ9UHD4 219 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 RARRES3Q9UL19 164 aa9.69□□□□□ -0.86
VPS53-202ENST00000389040 TMEM8BA6NDV4 472 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 CDRT15L2A8MXV6 281 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 CASC3O15234 703 aaKnown RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 GGT1P19440 569 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 MAGP20916 626 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 TACR1P25103 407 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 HNF4AP41235 474 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 SEPHS1P49903 392 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 RPS15AP62244 130 aaKnown RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 CYP4F3Q08477 520 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 LAPTM5Q13571 262 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 DOC2AQ14183 400 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 C10orf62Q5T681 223 aaPredicted RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 INTS11Q5TA45 600 aaKnown RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 GLYATQ6IB77 296 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 GRHL2Q6ISB3 625 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 NOXRED1Q6NXP6 359 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 DNAJC14Q6Y2X3 702 aaPredicted RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 FAM129CQ86XR2 697 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 MSRB3Q8IXL7 192 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 GPR135Q8IZ08 494 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 C2orf73Q8N5S3 287 aaPredicted RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 PACRGLQ8N7B6 248 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 TTLQ8NG68 377 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 OR2T12Q8NG77 320 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 WDR20Q8TBZ3 569 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 SLC5A11Q8WWX8 675 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 TESCQ96BS2 214 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 WDR34Q96EX3 536 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 FCRL1Q96LA6 429 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 NSMCE2Q96MF7 247 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 ZNF583Q96ND8 569 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 ZNF285Q96NJ3 590 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 TSSK3Q96PN8 268 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 OR4K3Q96R72 315 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 SH3GL1Q99961 368 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 ZFYVE21Q9BQ24 234 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 THUMPD3Q9BV44 507 aaKnown RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 OSBPL11Q9BXB4 747 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 NT5DC2Q9H857 520 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 SLC25A37Q9NYZ2 338 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 AP3M1Q9Y2T2 418 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 TRBV5-3A0A0A0MS03 114 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 SAC3D1A6NKF1 404 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 H0YIV9 168 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 SOCS2O14508 198 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 ERN1O75460 977 aaKnown RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 GMNNO75496 209 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 TNFSF15O95150 251 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms