RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 ABT1Q9ULW3 272 aaKnown RBP13.09□□□□□ -0.31
USP49-201ENST00000373006 SSR3Q9UNL2 185 aa13.09□□□□□ -0.31
USP49-201ENST00000373006 EXO1Q9UQ84 846 aaKnown RBP13.09□□□□□ -0.31
USP49-201ENST00000373006 VWA8A3KMH1 1905 aa13.08□□□□□ -0.31
USP49-201ENST00000373006 TRBV4-1A0A0J9YWV2 114 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 TRBC2A0A5B9 178 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 FADS2P1A8MWK0 482 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 KPNA5O15131 536 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 PLA2G10O15496 165 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 NOS1APO75052 506 aaPredicted RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 APOL3O95236 402 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 C8GP07360 202 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 OR56A5P0C7T3 313 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 PSKH1P11801 424 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 CSTF2P33240 577 aaKnown RBP eCLIP13.08□□□□□ -0.32
USP49-201ENST00000373006 IL12RB1P42701 662 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 XCR1P46094 333 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 RPS5P46782 204 aaKnown RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 AP1S1P61966 158 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 CDK6Q00534 326 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 LRRC74AQ0VAA2 488 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 EFR3AQ14156 821 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 SLC5A12Q1EHB4 618 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 GLYR1Q49A26 553 aaPredicted RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 CCSMST1Q4G0I0 132 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 SAXO2Q658L1 398 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 SLC24A5Q71RS6 500 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 OTOP2Q7RTS6 562 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 THOC6Q86W42 341 aaKnown RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 TMEM173Q86WV6 379 aaPredicted RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 VWA5B2Q8N398 1253 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 LMNTD1Q8N9Z9 388 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 LINC01599Q8WXQ3 324 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 FCRL1Q96LA6 429 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 MAPKAP1Q9BPZ7 522 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 ZC4H2Q9NQZ6 224 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 SPATA6Q9NWH7 488 aaPredicted RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 STUB1Q9UNE7 303 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 CORO2BQ9UQ03 480 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 LSM2Q9Y333 95 aaKnown RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 HSPB11Q9Y547 144 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 CLCA3PQ9Y6N3 262 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 TMEM189-UBE2V1I3L0A0 370 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 I3L521 148 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 SLC9A3P48764 834 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 SLC35F1Q5T1Q4 408 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 ANXA8L1Q5VT79 327 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 DPY19L3Q6ZPD9 716 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 CCDC149Q6ZUS6 474 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 ENKURQ8TC29 256 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 LRRC20Q8TCA0 184 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 KLHL6Q8WZ60 621 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 ZNF282Q9UDV7 671 aaPredicted RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 PPIBP23284 216 aaKnown RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 CHI3L1P36222 383 aaPredicted RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 RHAGQ02094 409 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 ASAH1Q13510 395 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.08□□□□□ -0.32
USP49-201ENST00000373006 PHC2Q8IXK0 858 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 TCEANCQ8N8B7 351 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 NLGN4YQ8NFZ3 816 aaPredicted RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 RASSF5Q8WWW0 418 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 MSANTD3Q96H12 275 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 TMEM80Q96HE8 168 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 MKRN2Q9H000 416 aaKnown RBP13.08□□□□□ -0.32
USP49-201ENST00000373006 SEC14L4Q9UDX3 406 aa13.08□□□□□ -0.32
USP49-201ENST00000373006 TRPM7Q96QT4 1865 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 OR2AG2A6NM03 316 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 APEX1P27695 318 aaKnown RBP13.07□□□□□ -0.32
USP49-201ENST00000373006 SDC2P34741 201 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 SOAT1P35610 550 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 TEKQ02763 1124 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 FAPQ12884 760 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 NFE2L1Q14494 772 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 TAF12Q16514 161 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 USP30Q70CQ3 517 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 TIGD4Q8IY51 512 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 LAS2Q8IYD9 372 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 RDH10Q8IZV5 341 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 ZNF557Q8N988 423 aaPredicted RBP13.07□□□□□ -0.32
USP49-201ENST00000373006 SYT14Q8NB59 555 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 ATP6V1C2Q8NEY4 427 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 HUS1BQ8NHY5 278 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 CREB3L4Q8TEY5 395 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 C11orf24Q96F05 449 aaPredicted RBP13.07□□□□□ -0.32
USP49-201ENST00000373006 RIPOR3Q96MK2 946 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 FERD3LQ96RJ6 166 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 ACAT2Q9BWD1 397 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 SPATA9Q9BWV2 254 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 TTLL2Q9BWV7 592 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 CWH43Q9H720 699 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 SLC25A19Q9HC21 320 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 TXNL4BQ9NX01 149 aaKnown RBP13.07□□□□□ -0.32
USP49-201ENST00000373006 OR51B4Q9Y5P0 310 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 TMEM202A6NGA9 273 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 NPIPB8E9PQR5 432 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 FFAR1O14842 300 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 MSL3P1P0C860 447 aa13.07□□□□□ -0.32
USP49-201ENST00000373006 PTX3P26022 381 aaPredicted RBP13.07□□□□□ -0.32
USP49-201ENST00000373006 RPS13P62277 151 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms