RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 HMGB1P1B2RPK0 211 aaPredicted RBP3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 NEDD8-MDP1E9PL57 170 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 GRAP2O75791 330 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 EZRP15311 586 aaKnown RBP3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 IFNAR1P17181 557 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 CCND3P30281 292 aaPredicted RBP3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 CHRNA3P32297 505 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 IST1P53990 364 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 ZNF776Q68DI1 518 aaPredicted RBP3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 CASC4Q6P4E1 433 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 DCLRE1AQ6PJP8 1040 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 NUFIP2Q7Z417 695 aaKnown RBP3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 GLRX5Q86SX6 157 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 NLRP14Q86W24 1093 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 CACUL1Q86Y37 369 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 NAXDQ8IW45 347 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 KLHL7Q8IXQ5 586 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 THNSL1Q8IYQ7 743 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 SIX6OS1Q8N1H7 587 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 CARNMT1Q8N4J0 409 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 C11orf42Q8N5U0 333 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 TMEM99Q8N816 258 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 MRAPQ8TCY5 172 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 RANBP9Q96S59 729 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 SP140LQ9H930 580 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 MRPL17Q9NRX2 175 aaKnown RBP3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 MED17Q9NVC6 651 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 ITGA11Q9UKX5 1188 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 PFASO15067 1338 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 UMODL1Q5DID0 1318 aa3.36□□□□□ -1.87
RNU4-28P-201ENST00000364739 TRAV9-2A0A087WT02 112 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 TMCO5BA8MYB1 307 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 KBTBD13C9JR72 458 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 H0YIG0 161 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 SRPX2O60687 465 aaPredicted RBP3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 HSPA4LO95757 839 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 KRT3P12035 628 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 HMGCLP35914 325 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 FASTKQ14296 549 aaKnown RBP3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 FHL5Q5TD97 284 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 ARMCX5Q6P1M9 558 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 CCBE1Q6UXH8 406 aaPredicted RBP3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 BAIAP2L2Q6UXY1 529 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 ZNF781Q8N8C0 355 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 OR6F1Q8NGZ6 308 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 CORO2AQ92828 525 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 CCM2Q9BSQ5 444 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 IDI2Q9BXS1 227 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 NMUR1Q9HB89 426 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 S100A14Q9HCY8 104 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 CUTCQ9NTM9 273 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 GPR132Q9UNW8 380 aa3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 MRPL11Q9Y3B7 192 aaKnown RBP3.35□□□□□ -1.87
RNU4-28P-201ENST00000364739 YDJCA8MPS7 323 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 M0R296 226 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 CSO75390 466 aaKnown RBP3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 FRAT2O75474 233 aaPredicted RBP3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 SIX3O95343 332 aaPredicted RBP3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 OR9G9P0C7N8 305 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 ODC1P11926 461 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 ANPEPP15144 967 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 SLC1A6P48664 564 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 LTB4RQ15722 352 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 PCK2Q16822 640 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 TIMM50Q3ZCQ8 353 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 PRR30Q53SZ7 412 aaPredicted RBP3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 ZNF730Q6ZMV8 503 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 AQP12AQ8IXF9 295 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 C4orf19Q8IY42 314 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 NHLRC2Q8NBF2 726 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 RNF149Q8NC42 400 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 C8orf46Q8TAG6 207 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 PARK7Q99497 189 aaKnown RBP3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 C17orf62Q9BQA9 187 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 ZNF559Q9BR84 538 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 CUEDC2Q9H467 287 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 NT5DC2Q9H857 520 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 ZCCHC17Q9NP64 241 aaKnown RBP3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 ZNF319Q9P2F9 582 aa3.34□□□□□ -1.87
RNU4-28P-201ENST00000364739 FAM168BA1KXE4 195 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 LRRTM2O43300 516 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 FHP07954 510 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 UMPSP11172 480 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 SOAT1P35610 550 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 FHITP49789 147 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 CRMP1Q14194 572 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 PSMD6Q15008 389 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 ABRAXAS2Q15018 415 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 IQCCQ4KMZ1 466 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 FLVCR1-AS1Q8TAF5 88 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 CKAP2Q8WWK9 683 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 THUMPD3Q9BV44 507 aaKnown RBP3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 ZNF446Q9NWS9 450 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 RCOR3Q9P2K3 495 aaPredicted RBP3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 SLC6A5Q9Y345 797 aa3.33□□□□□ -1.88
RNU4-28P-201ENST00000364739 GTPBP10A4D1E9 387 aaKnown RBP3.32□□□□□ -1.88
RNU4-28P-201ENST00000364739 TIMM44O43615 452 aa3.32□□□□□ -1.88
RNU4-28P-201ENST00000364739 CLN5O75503 358 aa3.32□□□□□ -1.88
RNU4-28P-201ENST00000364739 KBTBD11O94819 623 aa3.32□□□□□ -1.88
RNU4-28P-201ENST00000364739 LETM1O95202 739 aaPredicted RBP3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 186.8 ms