RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 TRMT10CQ7L0Y3 403 aaKnown RBP17.16■□□□□ 0.34
CLN3-202ENST00000355477 TMEM151AQ8N4L1 468 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 L3MBTL4Q8NA19 623 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 OR52B6Q8NGF0 335 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 NR4A3Q92570 626 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 NSUN5Q96P11 429 aaKnown RBP17.16■□□□□ 0.34
CLN3-202ENST00000355477 CDK15Q96Q40 435 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 DEFB126Q9BYW3 111 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 NOL11Q9H8H0 719 aaKnown RBP17.16■□□□□ 0.34
CLN3-202ENST00000355477 KLHL1Q9NR64 748 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 ADGRE2Q9UHX3 823 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 ZNF223Q9UK11 482 aaPredicted RBP17.16■□□□□ 0.34
CLN3-202ENST00000355477 FBXW2Q9UKT8 454 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 PPIEQ9UNP9 301 aaKnown RBP17.16■□□□□ 0.34
CLN3-202ENST00000355477 PCDHGA11Q9Y5H2 935 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 PCNX1Q96RV3 2341 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 TRBV11-1A0A0K0K1C0 115 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 WIPF3A6NGB9 483 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 PLPP1O14494 284 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 UGDHO60701 494 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 LDB3O75112 727 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 MYBL2P10244 700 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 SSR2P43308 183 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 PIK3CGP48736 1102 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 NEK2P51955 445 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 OC90Q02509 493 aaPredicted RBP17.15■□□□□ 0.34
CLN3-202ENST00000355477 SLAMF1Q13291 335 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 RCN2Q14257 317 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 ADGRD1Q6QNK2 874 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 ZNF227Q86WZ6 799 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 ARMC10Q8N2F6 343 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 WDR20Q8TBZ3 569 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 THAP3Q8WTV1 239 aaPredicted RBP17.15■□□□□ 0.34
CLN3-202ENST00000355477 NCLNQ969V3 563 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 RGMAQ96B86 450 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 SCMH1Q96GD3 660 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 MRPL57Q9BQC6 102 aaKnown RBP17.15■□□□□ 0.34
CLN3-202ENST00000355477 ALOXE3Q9BYJ1 711 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 EPB41L4BQ9H329 900 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 ZBTB26Q9HCK0 441 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 ADAP2Q9NPF8 381 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 PCTPQ9UKL6 214 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 OSGIN2Q9Y236 505 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 SLC5A6Q9Y289 635 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 PCDHGB6Q9Y5F9 930 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 CRYBG3Q68DQ2 2970 aa17.15■□□□□ 0.34
CLN3-202ENST00000355477 UNC79Q9P2D8 2635 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 STX16-NPEPL1H3BU86 382 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 STX16O14662 325 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 PRKNO60260 465 aaPredicted RBP17.14■□□□□ 0.33
CLN3-202ENST00000355477 SMIM24O75264 130 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 CLDN9O95484 217 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 ETHE1O95571 254 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 LDLRP01130 860 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 GP1BBP13224 206 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 PTX3P26022 381 aaPredicted RBP17.14■□□□□ 0.33
CLN3-202ENST00000355477 CLCN2P51788 898 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 KCNK10P57789 538 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 ID2Q02363 134 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 SLC29A2Q14542 456 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 ZRSR2Q15696 482 aaKnown RBP17.14■□□□□ 0.33
CLN3-202ENST00000355477 RPS27LQ71UM5 84 aaKnown RBP17.14■□□□□ 0.33
CLN3-202ENST00000355477 GSPT2Q8IYD1 628 aaKnown RBP17.14■□□□□ 0.33
CLN3-202ENST00000355477 DNAJB8Q8NHS0 232 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 PTPMT1Q8WUK0 201 aaPredicted RBP17.14■□□□□ 0.33
CLN3-202ENST00000355477 ANKRD9Q96BM1 317 aaPredicted RBP17.14■□□□□ 0.33
CLN3-202ENST00000355477 MTFMTQ96DP5 389 aaKnown RBP17.14■□□□□ 0.33
CLN3-202ENST00000355477 ZNF717Q9BY31 904 aaPredicted RBP17.14■□□□□ 0.33
CLN3-202ENST00000355477 LRFN1Q9P244 771 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 VTI1BQ9UEU0 232 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 TMCO1Q9UM00 188 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 CROCCQ5TZA2 2017 aa17.14■□□□□ 0.33
CLN3-202ENST00000355477 A0A1B0GTL3 188 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 IFNA16P05015 189 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 SP1P08047 785 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 CD46P15529 392 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 CPN2P22792 545 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 CCNG1P51959 295 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 RAP1GDS1P52306 607 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 STX4Q12846 297 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 ELAVL1Q15717 326 aaKnown RBP17.13■□□□□ 0.33
CLN3-202ENST00000355477 LGSNQ5TDP6 509 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 TIFABQ6ZNK6 161 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 OR4N5Q8IXE1 308 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 TMEM132CQ8N3T6 1108 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 ATP6V1E2Q96A05 226 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 REPS1Q96D71 796 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 VMP1Q96GC9 406 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 NTMT1Q9BV86 223 aa17.13■□□□□ 0.33
CLN3-202ENST00000355477 MRPL46Q9H2W6 279 aaKnown RBP17.13■□□□□ 0.33
CLN3-202ENST00000355477 TRIM45Q9H8W5 580 aaPredicted RBP17.13■□□□□ 0.33
CLN3-202ENST00000355477 TMEM200CA6NKL6 621 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 FOXE1O00358 373 aaPredicted RBP17.12■□□□□ 0.33
CLN3-202ENST00000355477 PPP6CO00743 305 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 LRRTM2O43300 516 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 EEDO75530 441 aaKnown RBP17.12■□□□□ 0.33
CLN3-202ENST00000355477 DDAH2O95865 285 aa17.12■□□□□ 0.33
CLN3-202ENST00000355477 CRYABP02511 175 aaKnown RBP17.12■□□□□ 0.33
CLN3-202ENST00000355477 TRHRP34981 398 aaPredicted RBP17.12■□□□□ 0.33
CLN3-202ENST00000355477 BSGP35613 385 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms