RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PPP1R36Q96LQ0 422 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 WDR92Q96MX6 357 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 DPYSL5Q9BPU6 564 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PAIP2Q9BPZ3 127 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 LBHD1Q9BQE6 289 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 THTPAQ9BU02 230 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SORBS1Q9BX66 1292 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 TRIM54Q9BYV2 358 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ABCG4Q9H172 646 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 NOL11Q9H8H0 719 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 ITM2CQ9NQX7 267 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 MAN2C1Q9NTJ4 1040 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 DCAF13Q9NV06 445 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 TRPM5Q9NZQ8 1165 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 STOX2Q9P2F5 926 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 ATXN10Q9UBB4 475 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 EPS15L1Q9UBC2 864 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PILRAQ9UKJ1 303 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 NTNG1Q9Y2I2 539 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PCDHGB1Q9Y5G3 927 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 WNT6Q9Y6F9 365 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CNTRLQ7Z7A1 2325 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 GOLGA4Q13439 2230 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 LRBAP50851 2863 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 A0A0A6YYD5 115 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 A0A0G2JNJ9 132 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 GLYATL1P3A0A0U1RQE8 302 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 H3BNH8 94 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PSMD12O00232 456 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 TULP3O75386 442 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CYP7B1O75881 506 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SCELO95171 688 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CD1AP06126 327 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 RB1P06400 928 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CAPN1P07384 714 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 TROVE2P10155 538 aaKnown RBP eCLIP2.2□□□□□ -2.06
VPS54-202ENST00000354504 IRF1P10914 325 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 MTHFD1P11586 935 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 ATP1B2P14415 290 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 DDCP20711 480 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SPAM1P38567 509 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SLC11A2P49281 568 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CLK3P49761 638 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 ARPP19P56211 112 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 FXYD6P3P58550 94 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ISL1P61371 349 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SP140Q13342 867 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 HTR4Q13639 388 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CAPRIN1Q14444 709 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZNF234Q14588 700 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 IRF3Q14653 427 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 KCNMB1Q16558 191 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 FAM83EQ2M2I3 478 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZNF284Q2VY69 593 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 HNRNPA1L2Q32P51 320 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 TTLL9Q3SXZ7 439 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZNF805Q5CZA5 627 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ARMC12Q5T9G4 340 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 KDM4DQ6B0I6 523 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 FAM71E1Q6IPT2 247 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 TTC23LQ6PF05 361 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CYP20A1Q6UW02 462 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PARM1Q6UWI2 310 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SPATA19Q7Z5L4 167 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 B3GNT8Q7Z7M8 397 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 MRGPREQ86SM8 312 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ADGRE4PQ86SQ3 457 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZBTB2Q8N680 514 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 GPATCH11Q8N954 259 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 GPR156Q8NFN8 814 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ABHD11Q8NFV4 315 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 OR8J3Q8NGG0 315 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZFP28Q8NHY6 868 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 STAG3L4Q8TBR4 150 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 AGR3Q8TD06 166 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZFP90Q8TF47 636 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZNF480Q8WV37 535 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CDKL2Q92772 493 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZFYVE19Q96K21 471 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 QRFPRQ96P65 431 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 RHNO1Q9BSD3 238 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CINPQ9BW66 212 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 FSD1LQ9BXM9 530 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 TM6SF2Q9BZW4 377 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SLC32A1Q9H598 525 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 COQ10BQ9H8M1 238 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SEMA4BQ9NPR2 832 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 TRPV5Q9NQA5 729 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 C6orf203Q9P0P8 240 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 TAAR2Q9P1P5 351 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 Q9UFV3 132 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ATP6V1HQ9UI12 483 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 RAB26Q9ULW5 256 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SLC17A4Q9Y2C5 497 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 HEMK1Q9Y5R4 338 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 ADGRG4Q8IZF6 3080 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 A0A087WV62 115 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 C17orf113A0A1B0GUU1 675 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 FAM220BPB1ANY3 271 aa2.19□□□□□ -2.06
VPS54-202ENST00000354504 M0QX08 132 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms