RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 SLC34A3Q8N130 599 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 ARMC10Q8N2F6 343 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 GHDCQ8N2G8 530 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 RNF175Q8N4F7 328 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 OR7G3Q8NG95 312 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 ALOXE3Q9BYJ1 711 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 PPIEQ9UNP9 301 aaKnown RBP18.18■□□□□ 0.5
LIME1-201ENST00000309546 ERVK-11Q9UQG0 969 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 ENTPD4Q9Y227 616 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 NOTCH2Q04721 2471 aa18.18■□□□□ 0.5
LIME1-201ENST00000309546 GTF3C1Q12789 2109 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 A0A096LPK6 155 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 SYNDIG1LA6NDD5 238 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 TFECO14948 347 aaPredicted RBP18.17■□□□□ 0.5
LIME1-201ENST00000309546 ZFAND5O76080 213 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 MTHFD2P13995 350 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 TNNI3P19429 210 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 HIST1H1TP22492 207 aaPredicted RBP18.17■□□□□ 0.5
LIME1-201ENST00000309546 CPN2P22792 545 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 SERPINB1P30740 379 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 SERPINB8P50452 374 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 RAP1GDS1P52306 607 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 GPR85P60893 370 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 E2F2Q14209 437 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 SETDB1Q15047 1291 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 PFKFB4Q16877 469 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 TMEM35AQ53FP2 167 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 RNFT1Q5M7Z0 435 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 UBAP2Q5T6F2 1119 aaKnown RBP18.17■□□□□ 0.5
LIME1-201ENST00000309546 SP5Q6BEB4 398 aaPredicted RBP18.17■□□□□ 0.5
LIME1-201ENST00000309546 KLC3Q6P597 504 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 RPTNQ6XPR3 784 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 CHSY3Q70JA7 882 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 SULF2Q8IWU5 870 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 ZNF808Q8N4W9 903 aaPredicted RBP18.17■□□□□ 0.5
LIME1-201ENST00000309546 RHEBL1Q8TAI7 183 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 DAZLQ92904 295 aaKnown RBP18.17■□□□□ 0.5
LIME1-201ENST00000309546 MARVELD3Q96A59 401 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 CMTM7Q96FZ5 175 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 SORBS1Q9BX66 1292 aaKnown RBP18.17■□□□□ 0.5
LIME1-201ENST00000309546 OR8D2Q9GZM6 311 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 VPS11Q9H270 941 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 OR51B5Q9H339 312 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 NINJ2Q9NZG7 142 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 KCMF1Q9P0J7 381 aa18.17■□□□□ 0.5
LIME1-201ENST00000309546 HMX2A2RU54 273 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 A8MVJ9 347 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 KLRC4-KLRK1H3BQV0 150 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 HNRNPRO43390 633 aaKnown RBP18.16■□□□□ 0.5
LIME1-201ENST00000309546 PEX1O43933 1283 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 GRNP28799 593 aaKnown RBP18.16■□□□□ 0.5
LIME1-201ENST00000309546 TYK2P29597 1187 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 GPR143P51810 404 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 NAA30Q147X3 362 aaPredicted RBP18.16■□□□□ 0.5
LIME1-201ENST00000309546 KHDRBS2Q5VWX1 349 aaKnown RBP18.16■□□□□ 0.5
LIME1-201ENST00000309546 MDGA2Q7Z553 956 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 CCDC91Q7Z6B0 441 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 OR14A16Q8NHC5 309 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 HUS1BQ8NHY5 278 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 ASB15Q8WXK1 588 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 ZNF592Q92610 1267 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 MTERF1Q99551 399 aaKnown RBP18.16■□□□□ 0.5
LIME1-201ENST00000309546 ACTR8Q9H981 624 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 HPF1Q9NWY4 346 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 CPSF2Q9P2I0 782 aaKnown RBP18.16■□□□□ 0.5
LIME1-201ENST00000309546 VTI1BQ9UEU0 232 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 MTRF1LQ9UGC7 380 aaKnown RBP18.16■□□□□ 0.5
LIME1-201ENST00000309546 ZNF835Q9Y2P0 537 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 YARS2Q9Y2Z4 477 aaKnown RBP18.16■□□□□ 0.5
LIME1-201ENST00000309546 TEX15Q9BXT5 2789 aa18.16■□□□□ 0.5
LIME1-201ENST00000309546 CRYBG3Q68DQ2 2970 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 LRRC14BA6NHZ5 514 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 C17orf105B2RV13 164 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 WWP2O00308 870 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 OR2J2O76002 312 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 KLHL2O95198 593 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 PTGER1P34995 402 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 ADORA2A-AS1P86434 159 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 ART3Q13508 389 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 SERTAD2Q14140 314 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 ACAP2Q15057 778 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 HSDL2Q6YN16 418 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 Q6ZPB1 254 aaPredicted RBP18.15■□□□□ 0.5
LIME1-201ENST00000309546 LURAP1LQ8IV03 231 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 ZNF321PQ8N8H1 164 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 POGLUT1Q8NBL1 392 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 MORN4Q8NDC4 146 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 PTPMT1Q8WUK0 201 aaPredicted RBP18.15■□□□□ 0.5
LIME1-201ENST00000309546 CENPKQ9BS16 269 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 ACSS3Q9H6R3 686 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 TIMMDC1Q9NPL8 285 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 PCNX1Q96RV3 2341 aa18.15■□□□□ 0.5
LIME1-201ENST00000309546 CDC40O60508 579 aaKnown RBP eCLIP18.14■□□□□ 0.492e-6■□□□□ 8.5
LIME1-201ENST00000309546 SCELO95171 688 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 ACSL3O95573 720 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 ALDOAP04075 364 aaKnown RBP18.14■□□□□ 0.49
LIME1-201ENST00000309546 ARL1P40616 181 aaPredicted RBP18.14■□□□□ 0.49
LIME1-201ENST00000309546 ALDH18A1P54886 795 aaKnown RBP18.14■□□□□ 0.49
LIME1-201ENST00000309546 PHEXP78562 749 aa18.14■□□□□ 0.49
LIME1-201ENST00000309546 SLAMF1Q13291 335 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms