RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 CD68P34810 354 aaPredicted RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 CPOXP36551 454 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 ENPP2Q13822 863 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 CBFBQ13951 182 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 NFE2L1Q14494 772 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 PCBP2Q15366 365 aaKnown RBP eCLIP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 ABCA11PQ4W5N1 156 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 ZNF527Q8NB42 609 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 OR5J2Q8NH18 312 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 SH3RF2Q8TEC5 729 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 GATAD2BQ8WXI9 593 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 TRIM43Q96BQ3 446 aaPredicted RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 GAL3ST4Q96RP7 486 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 SECISBP2Q96T21 854 aaKnown RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 TAS2R3Q9NYW6 316 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 COPZ2Q9P299 210 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 RABL2AQ9UBK7 228 aaPredicted RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 RABL2BQ9UNT1 228 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 Q9Y3F1 56 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 MYH7P12883 1935 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 WASP42768 502 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 WNT7BP56706 349 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 PRKCDQ05655 676 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 RING1Q06587 406 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 PSAPL1Q6NUJ1 521 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 ASB15Q8WXK1 588 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 TFGQ92734 400 aaPredicted RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 TLL1O43897 1013 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 COQ9O75208 318 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 RGS9O75916 674 aaPredicted RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 KAT7O95251 611 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 ADAP00813 363 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 LCKP06239 509 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 GNAO1P09471 354 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 HAPLN1P10915 354 aaPredicted RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 ATP5A1P25705 553 aaKnown RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 NDUFS1P28331 727 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 MAN2A2P49641 1150 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 ACTC1P68032 377 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 ACTA1P68133 377 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 GPR17Q13304 367 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 TLX3O43711 291 aaPredicted RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 CFL1P23528 166 aaKnown RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 MLLT10P55197 1068 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 ERVPABLB-1P60509 514 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 BTN3A2P78410 334 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 MLLT1Q03111 559 aaPredicted RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 LRRN1Q6UXK5 716 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 RANBP10Q6VN20 620 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 CEACAM19Q7Z692 300 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 TCEAL4Q96EI5 215 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 LRR1Q96L50 414 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 OR4K3Q96R72 315 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 ZNF471Q9BX82 626 aaPredicted RBP12.35□□□□□ -0.43
COL3A1-201ENST00000304636 WDR26Q9H7D7 661 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 PGDP52209 483 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 MINDY4Q4G0A6 757 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 C22orf39Q6P5X5 142 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 Q6ZVU0 165 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 VTCN1Q7Z7D3 282 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 ZNF366Q8N895 744 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 RNF121Q9H920 327 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 CHMP1AQ9HD42 196 aaPredicted RBP12.34□□□□□ -0.43
COL3A1-201ENST00000304636 NLKQ9UBE8 527 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 M0R036 132 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 SCAMP2O15127 329 aaKnown RBP12.34□□□□□ -0.43
COL3A1-201ENST00000304636 C8AP07357 584 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 AGXTP21549 392 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 CA5AP35218 305 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 HK3P52790 923 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 SNTB2Q13425 540 aaKnown RBP12.34□□□□□ -0.43
COL3A1-201ENST00000304636 GK3PQ14409 553 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 RPL13AP3Q6NVV1 102 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 LARP4Q71RC2 724 aaKnown RBP eCLIP12.34□□□□□ -0.43
COL3A1-201ENST00000304636 UBE2Q1Q7Z7E8 422 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 LHFPL3Q86UP9 236 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 TMEM145Q8NBT3 493 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 CHDHQ8NE62 594 aaPredicted RBP12.34□□□□□ -0.43
COL3A1-201ENST00000304636 PDLIM7Q9NR12 457 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 COPS7AQ9UBW8 275 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 WDR45Q9Y484 360 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 PHRF1Q9P1Y6 1649 aaKnown RBP12.34□□□□□ -0.43
COL3A1-201ENST00000304636 ACP5P13686 325 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 ALAS2P22557 587 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 SLC35F1Q5T1Q4 408 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 GPRIN1Q7Z2K8 1008 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 NOXA1Q86UR1 476 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 DCUN1D3Q8IWE4 304 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 TP53INP2Q8IXH6 220 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 TMEM151AQ8N4L1 468 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 PNLDC1Q8NA58 520 aaKnown RBP12.34□□□□□ -0.43
COL3A1-201ENST00000304636 MTG2Q9H4K7 406 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 ZBTB20Q9HC78 741 aaPredicted RBP12.34□□□□□ -0.43
COL3A1-201ENST00000304636 ZDHHC4Q9NPG8 344 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 SLC39A1Q9NY26 324 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 PCDHB14Q9Y5E9 798 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 MMP20O60882 483 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 CXCR1P25024 350 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 NR4A2P43354 598 aa12.34□□□□□ -0.43
COL3A1-201ENST00000304636 GRM2Q14416 872 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms