RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MMP21Q8N119 569 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 CYP4Z2PQ8N1L4 340 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 HCAR2Q8TDS4 363 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 CAPNS2Q96L46 248 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 SORBS1Q9BX66 1292 aaKnown RBP17.86■□□□□ 0.45
CPSF3-201ENST00000238112 CXorf36Q9H7Y0 433 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 SPATA7Q9P0W8 599 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 TMCC3Q9ULS5 477 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 DDX6P26196 483 aaKnown RBP eCLIP17.85■□□□□ 0.45
CPSF3-201ENST00000238112 IRS1P35568 1242 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 DEFA1P59665 94 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 DEFA3P59666 94 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 FAM180BQ6P0A1 224 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 TMIGD1Q6UXZ0 262 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 REM2Q8IYK8 340 aaPredicted RBP17.85■□□□□ 0.45
CPSF3-201ENST00000238112 SCAIQ8N9R8 606 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 VN1R2Q8NFZ6 395 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 CFHR5Q9BXR6 569 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 NUAK2Q9H093 628 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 QPCTLQ9NXS2 382 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 PCDHGB6Q9Y5F9 930 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 WNT6Q9Y6F9 365 aa17.85■□□□□ 0.45
CPSF3-201ENST00000238112 SH3BP5O60239 455 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 KCNK2O95069 426 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 DNTTP04053 509 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 BCHEP06276 602 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 MAGP20916 626 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 DGKEP52429 567 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.84■□□□□ 0.45
CPSF3-201ENST00000238112 CARTPTQ16568 116 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 RPS26P11Q5JNZ5 115 aaPredicted RBP17.84■□□□□ 0.45
CPSF3-201ENST00000238112 PRAMEF14Q5SWL7 426 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 PRAMEF13Q5VWM6 474 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 LRRC56Q8IYG6 542 aaPredicted RBP17.84■□□□□ 0.45
CPSF3-201ENST00000238112 CLIP4Q8N3C7 705 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 CEP19Q96LK0 163 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 MIR1-1HGQ9H1L0 117 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 C11orf16Q9NQ32 467 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 KCND3Q9UK17 655 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 ICKQ9UPZ9 632 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 HELZP42694 1942 aaKnown RBP17.84■□□□□ 0.45
CPSF3-201ENST00000238112 FAM227AF5H4B4 570 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 PI15O43692 258 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 LILRB5O75023 590 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 RECKO95980 971 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 ALDH9A1P49189 494 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 RPS26P62854 115 aaKnown RBP17.84■□□□□ 0.45
CPSF3-201ENST00000238112 KCNJ8Q15842 424 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 ATAD3BQ5T9A4 648 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 RAET1GQ6H3X3 334 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 ZNF770Q6IQ21 691 aaPredicted RBP17.84■□□□□ 0.45
CPSF3-201ENST00000238112 TNFAIP8L2Q6P589 184 aaPredicted RBP17.84■□□□□ 0.45
CPSF3-201ENST00000238112 KRT78Q8N1N4 520 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 EFHD2Q96C19 240 aaPredicted RBP17.84■□□□□ 0.45
CPSF3-201ENST00000238112 PDXPQ96GD0 296 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 COQ10AQ96MF6 247 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 IL4I1Q96RQ9 567 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 AHSPQ9NZD4 102 aa17.84■□□□□ 0.45
CPSF3-201ENST00000238112 CAB39Q9Y376 341 aaPredicted RBP17.84■□□□□ 0.45
CPSF3-201ENST00000238112 TRBV4-1A0A0J9YWV2 114 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 TLR4O00206 839 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 ARHGAP33O14559 1287 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 ASNA1O43681 348 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 SOD1P00441 154 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 ADAP00813 363 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 ADRA2AP08913 450 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 LIM2P55344 173 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 PUM1Q14671 1186 aaKnown RBP eCLIP17.83■□□□□ 0.45
CPSF3-201ENST00000238112 DEPDC1Q5TB30 811 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 DESI1Q6ICB0 168 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 C19orf48Q6RUI8 117 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 FAM92BQ6ZTR7 304 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 ATCAYQ86WG3 371 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 SETD7Q8WTS6 366 aaKnown RBP17.83■□□□□ 0.45
CPSF3-201ENST00000238112 UCK2Q9BZX2 261 aa17.83■□□□□ 0.45
CPSF3-201ENST00000238112 MN1Q10571 1320 aaPredicted RBP17.83■□□□□ 0.44
CPSF3-201ENST00000238112 PRRC2BQ5JSZ5 2229 aaKnown RBP17.83■□□□□ 0.44
CPSF3-201ENST00000238112 LOC110117498-PIK3R3F6TDL0 507 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 K7ESM1 405 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 FFAR1O14842 300 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 PIPP12273 146 aaPredicted RBP17.83■□□□□ 0.44
CPSF3-201ENST00000238112 SPNP16150 400 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 ETV6P41212 452 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 GPR1P46091 355 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 TP53BP2Q13625 1128 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 LEXMQ3ZCV2 418 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.83■□□□□ 0.44
CPSF3-201ENST00000238112 SLC9B2Q86UD5 537 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 HORMAD2Q8N7B1 307 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 SLC38A5Q8WUX1 472 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 PIK3R3Q92569 461 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 NUS1Q96E22 293 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 TRNT1Q96Q11 434 aaKnown RBP17.83■□□□□ 0.44
CPSF3-201ENST00000238112 KCNS3Q9BQ31 491 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 EHD3Q9NZN3 535 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 CRNNQ9UBG3 495 aaPredicted RBP17.83■□□□□ 0.44
CPSF3-201ENST00000238112 TSC22D4Q9Y3Q8 395 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 DOCK6Q96HP0 2047 aa17.83■□□□□ 0.44
CPSF3-201ENST00000238112 ANKDD1BA6NHY2 528 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 PDZK1P1A8MUH7 402 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms