RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 LMAN1P49257 510 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ZNF41P51814 821 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 RIPPLY3P57055 190 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ERVK-16P61578 105 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PPIAP62937 165 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 CXCL6P80162 114 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 IGLV3-21P80748 117 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 SULT2A1Q06520 285 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 CNTN1Q12860 1018 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 AIMP1Q12904 312 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 RUNX3Q13761 415 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 GCKRQ14397 625 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 COG2Q14746 738 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 MEF2DQ14814 521 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SLC17A1Q14916 467 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 RASA2Q15283 850 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 TOMM20Q15388 145 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 MAPK11Q15759 364 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 RBBP7Q16576 425 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 TMEM44Q2T9K0 475 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 TIMM50Q3ZCQ8 353 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 LRRC37A5PQ49AS3 106 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 EPC2Q52LR7 807 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ZNF542PQ5EBM4 170 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 VWA2Q5GFL6 755 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 MUC21Q5SSG8 566 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 C9orf129Q5T035 196 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 ATAD3CQ5T2N8 411 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 AGAP7PQ5VUJ5 663 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 WSCD1Q658N2 575 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 FAM91A1Q658Y4 838 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ZNF776Q68DI1 518 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 GPR139Q6DWJ6 353 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PM20D1Q6GTS8 502 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 KRT80Q6KB66 452 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ZNF530Q6P9A1 599 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 EMBQ6PCB8 327 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PODNL1Q6PEZ8 512 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 IGFL2Q6UWQ7 119 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 CLEC4GQ6UXB4 293 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 C15orf52Q6ZUT6 534 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 TMUB2Q71RG4 321 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ERN2Q76MJ5 926 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 CCDC186Q7Z3E2 898 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 NUFIP2Q7Z417 695 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 GLRX5Q86SX6 157 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ITIH5Q86UX2 942 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 MEX3DQ86XN8 651 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 CATSPER3Q86XQ3 398 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 CACUL1Q86Y37 369 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 HIPK1Q86Z02 1210 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 KRTAP13-1Q8IUC0 172 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 LRRC49Q8IUZ0 686 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 CCDC71Q8IV32 467 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 WDR49Q8IV35 697 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 MFN1Q8IWA4 741 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 TIGD4Q8IY51 512 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PRR22Q8IZ63 422 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 KIR2DL5AQ8N109 375 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 GPR137CQ8N3F9 429 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 POMGNT2Q8NAT1 580 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SLC4A11Q8NBS3 891 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 CLEC1AQ8NC01 280 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 CCDC191Q8NCU4 936 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 OR6F1Q8NGZ6 308 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 NCOA7Q8NI08 942 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 KIF18AQ8NI77 898 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 C8orf46Q8TAG6 207 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 GPR148Q8TDV2 347 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 HEXDCQ8WVB3 486 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SNRNP27Q8WVK2 155 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 SMPDL3AQ92484 453 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 FRAT1Q92837 279 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 BADQ92934 168 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 RIT1Q92963 219 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SECISBP2LQ93073 1101 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 MR1Q95460 341 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SLC35C1Q96A29 364 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 VPS33AQ96AX1 596 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PHYHIPLQ96FC7 376 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PPP1R16AQ96I34 528 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SERAC1Q96JX3 654 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 RUNDC3BQ96NL0 473 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 TSSK2Q96PF2 358 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ALKBH3Q96Q83 286 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 MCCC1Q96RQ3 725 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 RASL10BQ96S79 203 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 INTS14Q96SY0 518 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PSMB7Q99436 277 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 IL12RB2Q99665 862 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 HNRNPABQ99729 332 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 PRMT1Q99873 361 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 APOL2Q9BQE5 337 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 EBF4Q9BQW3 602 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ZNF559Q9BR84 538 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 TTYH2Q9BSA4 534 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 CCM2Q9BSQ5 444 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 INPP5KQ9BT40 448 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ST6GALNAC5Q9BVH7 336 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 NUSAP1Q9BXS6 441 aaKnown RBP0.29□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms