RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 CLCA3PQ9Y6N3 262 aa18■□□□□ 0.47
CLN3-262ENST00000637699 ANKHD1Q8IWZ3 2542 aaKnown RBP18■□□□□ 0.47
CLN3-262ENST00000637699 A0A0G2JNJ9 132 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 FAM221AA4D161 298 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 OR14I1A6ND48 311 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 ERI3O43414 337 aaKnown RBP17.99■□□□□ 0.47
CLN3-262ENST00000637699 NRDCO43847 1150 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 GLSO94925 669 aaPredicted RBP17.99■□□□□ 0.47
CLN3-262ENST00000637699 HOXB4P17483 251 aaPredicted RBP17.99■□□□□ 0.47
CLN3-262ENST00000637699 CNR1P21554 472 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 HNRNPH1P31943 449 aaKnown RBP17.99■□□□□ 0.47
CLN3-262ENST00000637699 RAB38P57729 211 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 SNTB1Q13884 538 aaKnown RBP17.99■□□□□ 0.47
CLN3-262ENST00000637699 SPANXN3Q5MJ09 141 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 NDUFAF5Q5TEU4 345 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 RTL6Q6ICC9 239 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 GK5Q6ZS86 529 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 CNTN4Q8IWV2 1026 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 ZZZ3Q8IYH5 903 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 TMEM132CQ8N3T6 1108 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 TMEM251Q8N6I4 163 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 CHDHQ8NE62 594 aaPredicted RBP17.99■□□□□ 0.47
CLN3-262ENST00000637699 MYRIPQ8NFW9 859 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 FAM173AQ9BQD7 235 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 NPLQ9BXD5 320 aaPredicted RBP17.99■□□□□ 0.47
CLN3-262ENST00000637699 POLDIP3Q9BY77 421 aaKnown RBP17.99■□□□□ 0.47
CLN3-262ENST00000637699 CXXC4Q9H2H0 198 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 Q9UFV3 132 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 ACAD8Q9UKU7 415 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 EML6Q6ZMW3 1958 aa17.99■□□□□ 0.47
CLN3-262ENST00000637699 LRIT2A6NDA9 550 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 B3GALT2O43825 422 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 H2AFYO75367 372 aaKnown RBP17.98■□□□□ 0.47
CLN3-262ENST00000637699 CTAG2O75638 210 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 TTC4O95801 387 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 IGHG3P01860 377 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 KLK2P20151 261 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 HK2P52789 917 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 PPP2R2AP63151 447 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 ELAVL1Q15717 326 aaKnown RBP17.98■□□□□ 0.47
CLN3-262ENST00000637699 PPP1R3AQ16821 1122 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 TEDDM1Q5T9Z0 273 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 ARSKQ6UWY0 536 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 HSDL2Q6YN16 418 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 TRILQ7L0X0 811 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 KLHDC8AQ8IYD2 350 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 FAM109AQ8N4B1 249 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 MS4A6EQ96DS6 147 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 CERS2Q96G23 380 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 SCYL1Q96KG9 808 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 PWWP2AQ96N64 755 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 EGFL8Q99944 293 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 ALKBH4Q9NXW9 302 aa17.98■□□□□ 0.47
CLN3-262ENST00000637699 MRPS33Q9Y291 106 aaKnown RBP17.98■□□□□ 0.47
CLN3-262ENST00000637699 ATP6AP2A0A1C7CYW4 349 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 CDC7O00311 574 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 ATP6AP2O75787 350 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 CELA3AP09093 270 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 C1GALT1C1LP0DN25 315 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 ADH7P40394 386 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 GDF5P43026 501 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 DNASE1L1P49184 302 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 PLA2G16P53816 162 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 CEBPEQ15744 281 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 CYP1B1Q16678 543 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 C18orf21Q32NC0 220 aaPredicted RBP17.97■□□□□ 0.47
CLN3-262ENST00000637699 MSS51Q4VC12 460 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 RNASEH2BQ5TBB1 312 aaKnown RBP17.97■□□□□ 0.47
CLN3-262ENST00000637699 FAM45BPQ6NSW5 357 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 TMIGD1Q6UXZ0 262 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 RTL4Q6ZR62 310 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 FAM47EQ6ZV65 393 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 IGDCC3Q8IVU1 814 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 ZNF595Q8IYB9 648 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 RASGEF1CQ8N431 466 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 ZNF321PQ8N8H1 164 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 FAM45AQ8TCE6 357 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 NINJ1Q92982 152 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 PDLIM5Q96HC4 596 aaKnown RBP17.97■□□□□ 0.47
CLN3-262ENST00000637699 CSF3RQ99062 836 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 CNPPD1Q9BV87 410 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 LDAHQ9H6V9 325 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 IL1RL2Q9HB29 575 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 ZNF358Q9NW07 568 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 ST6GALNAC2Q9UJ37 374 aa17.97■□□□□ 0.47
CLN3-262ENST00000637699 A0A1B0GVC2 190 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 NPEPPSL1A6NEC2 478 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 AQP7O14520 342 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 WDR47O94967 919 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 GNAZP19086 355 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 MAN2A2P49641 1150 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 SLBPQ14493 270 aaKnown RBP eCLIP17.96■□□□□ 0.47
CLN3-262ENST00000637699 SLC10A1Q14973 349 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 BBS9Q3SYG4 887 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 HP1BP3Q5SSJ5 553 aaPredicted RBP17.96■□□□□ 0.47
CLN3-262ENST00000637699 SLCO4C1Q6ZQN7 724 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 WDR53Q7Z5U6 358 aaPredicted RBP17.96■□□□□ 0.47
CLN3-262ENST00000637699 GALNT7Q86SF2 657 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 MORN4Q8NDC4 146 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 TTLQ8NG68 377 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms