RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 EFCAB7A8K855 629 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 SCO2O43819 266 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 FMO3P31513 532 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 GANABQ14697 944 aaKnown RBP19.7■□□□□ 0.74
UPF1-207ENST00000599848 BANPQ8N9N5 519 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 TSPEARQ8WU66 669 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 SLC7A6OSQ96CW6 309 aaPredicted RBP19.7■□□□□ 0.74
UPF1-207ENST00000599848 ACTRT3Q9BYD9 372 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 IKZF4Q9H2S9 585 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 PIAS1O75925 651 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 S100A6P06703 90 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 ETV3P41162 512 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 PERM1Q5SV97 790 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 ZNF611Q8N823 705 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 TIMMDC1Q9NPL8 285 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 EXOSC1Q9Y3B2 195 aaKnown RBP19.7■□□□□ 0.74
UPF1-207ENST00000599848 TEX13DA0A0J9YY54 714 aaPredicted RBP19.69■□□□□ 0.74
UPF1-207ENST00000599848 ACTL6BO94805 426 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 GSTT2P0CG29 244 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 POU4F2Q12837 409 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 GAS6Q14393 721 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 INO80EQ8NBZ0 244 aaPredicted RBP19.69■□□□□ 0.74
UPF1-207ENST00000599848 SLCO2A1Q92959 643 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 HHIPL1Q96JK4 782 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 ACRV1P26436 265 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 GABRA3P34903 492 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 ZNF33BQ06732 778 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 TIGD6Q17RP2 521 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 IRF2BP1Q8IU81 584 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 RANBP9Q96S59 729 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 CTPS2Q9NRF8 586 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 ZBTB11O95625 1053 aaPredicted RBP19.69■□□□□ 0.74
UPF1-207ENST00000599848 DDCP20711 480 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 EVX2Q03828 476 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 NFKBIDQ8NI38 313 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 GCDHQ92947 438 aaPredicted RBP19.69■□□□□ 0.74
UPF1-207ENST00000599848 HSPA12BQ96MM6 686 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 CASD1Q96PB1 797 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 STRA6Q9BX79 667 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 PREBQ9HCU5 417 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 SLAMF7Q9NQ25 335 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 FPR1P21462 350 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 GCH1P30793 250 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 S100A7P31151 101 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 EIF1AXP47813 144 aaKnown RBP19.69■□□□□ 0.74
UPF1-207ENST00000599848 RBM15BQ8NDT2 890 aaKnown RBP19.69■□□□□ 0.74
UPF1-207ENST00000599848 OR5AK3PQ8NH89 298 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 ZNF516Q92618 1163 aa19.69■□□□□ 0.74
UPF1-207ENST00000599848 METTL8Q9H825 291 aaKnown RBP19.69■□□□□ 0.74
UPF1-207ENST00000599848 CCDC59Q9P031 241 aaKnown RBP19.69■□□□□ 0.74
UPF1-207ENST00000599848 GRXCR1A8MXD5 290 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 PRAMEF2O60811 474 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 STC2O76061 302 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 TM4SF4P48230 202 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 CDH11P55287 796 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 FIGLAQ6QHK4 219 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 SPRYD4Q8WW59 207 aaPredicted RBP19.68■□□□□ 0.74
UPF1-207ENST00000599848 NSMAFQ92636 917 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 TSSK6Q9BXA6 273 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 M0QX08 132 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 USP53Q70EK8 1073 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 OR56A3Q8NH54 315 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 DPH7Q9BTV6 452 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 PELI2Q9HAT8 420 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 BAIAP2Q9UQB8 552 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 CDH10Q9Y6N8 788 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 SH3D21A4FU49 640 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 FAM159BA6NKW6 160 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 ANKRD28O15084 1053 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 ATE1O95260 518 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 ADRB3P13945 408 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 DAG1Q14118 895 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 PGAM5Q96HS1 289 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 TMEM41AQ96HV5 264 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 CRB3Q9BUF7 120 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 EVA1AQ9H8M9 152 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 CAPN8A6NHC0 703 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 FOXE1O00358 373 aaPredicted RBP19.68■□□□□ 0.74
UPF1-207ENST00000599848 UGT2B10P36537 528 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 NSDHLQ15738 373 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 MANEALQ5VSG8 457 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 TMEM53Q6P2H8 277 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 MRPL10Q7Z7H8 261 aaKnown RBP19.68■□□□□ 0.74
UPF1-207ENST00000599848 GIN1Q9NXP7 522 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 OARD1Q9Y530 152 aa19.68■□□□□ 0.74
UPF1-207ENST00000599848 KCNK5O95279 499 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 C8BP07358 591 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 CLEC12AQ5QGZ9 265 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 FAM69BQ5VUD6 431 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 NAT8LQ8N9F0 302 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 SLC2A13Q96QE2 648 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 ZNF382Q96SR6 550 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 MYNNQ9NPC7 610 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 KCNIP3Q9Y2W7 256 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 RTCAO00442 366 aaKnown RBP19.67■□□□□ 0.74
UPF1-207ENST00000599848 EIF2S3P41091 472 aaKnown RBP19.67■□□□□ 0.74
UPF1-207ENST00000599848 TGFBIQ15582 683 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 TMEM201Q5SNT2 666 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 GPR153Q6NV75 609 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 PAQR7Q86WK9 346 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms