RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 IGFL3Q6UXB1 125 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 ZYG11AQ6WRX3 759 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 TMEM52Q8NDY8 209 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 ARMC2Q8NEN0 867 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 BRIX1Q8TDN6 353 aaKnown RBP13.01□□□□□ -0.33
UPF1-205ENST00000598209 PSMF1Q92530 271 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 TM9SF4Q92544 642 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 L3HYPDHQ96EM0 354 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 MAGEB10Q96LZ2 347 aaPredicted RBP13.01□□□□□ -0.33
UPF1-205ENST00000598209 FRG2BQ96QU4 278 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 CSF3RQ99062 836 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 LPAR4Q99677 370 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 MAPKAP1Q9BPZ7 522 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 MFRPQ9BY79 579 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 EPN3Q9H201 632 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 ZBTB20Q9HC78 741 aaPredicted RBP13.01□□□□□ -0.33
UPF1-205ENST00000598209 LYRM4Q9HD34 91 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 NECTIN3Q9NQS3 549 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 PRTFDC1Q9NRG1 225 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 PSD3Q9NYI0 1048 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 KCMF1Q9P0J7 381 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 LGALS13Q9UHV8 139 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 PLAAQ9Y263 795 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 MRPS33Q9Y291 106 aaKnown RBP13.01□□□□□ -0.33
UPF1-205ENST00000598209 TCRBV16S1A1N1A0A5B0 115 aa13□□□□□ -0.33
UPF1-205ENST00000598209 CYR61O00622 381 aa13□□□□□ -0.33
UPF1-205ENST00000598209 CLDN4O14493 209 aa13□□□□□ -0.33
UPF1-205ENST00000598209 OR4F21O95013 312 aa13□□□□□ -0.33
UPF1-205ENST00000598209 ETHE1O95571 254 aa13□□□□□ -0.33
UPF1-205ENST00000598209 TUBBP07437 444 aa13□□□□□ -0.33
UPF1-205ENST00000598209 TSFMP43897 325 aaKnown RBP13□□□□□ -0.33
UPF1-205ENST00000598209 CD97P48960 835 aa13□□□□□ -0.33
UPF1-205ENST00000598209 ARFIP1P53367 373 aa13□□□□□ -0.33
UPF1-205ENST00000598209 HSD17B7P56937 341 aa13□□□□□ -0.33
UPF1-205ENST00000598209 SLC13A2Q13183 592 aa13□□□□□ -0.33
UPF1-205ENST00000598209 CUL3Q13618 768 aa13□□□□□ -0.33
UPF1-205ENST00000598209 EXT1Q16394 746 aa13□□□□□ -0.33
UPF1-205ENST00000598209 SGO1Q5FBB7 561 aa13□□□□□ -0.33
UPF1-205ENST00000598209 CRB2Q5IJ48 1285 aa13□□□□□ -0.33
UPF1-205ENST00000598209 C10orf62Q5T681 223 aaPredicted RBP13□□□□□ -0.33
UPF1-205ENST00000598209 SLC6A19Q695T7 634 aa13□□□□□ -0.33
UPF1-205ENST00000598209 JMJD6Q6NYC1 403 aaPredicted RBP13□□□□□ -0.33
UPF1-205ENST00000598209 ISLR2Q6UXK2 745 aa13□□□□□ -0.33
UPF1-205ENST00000598209 TRABD2AQ86V40 505 aa13□□□□□ -0.33
UPF1-205ENST00000598209 SCUBE1Q8IWY4 988 aa13□□□□□ -0.33
UPF1-205ENST00000598209 ZNF595Q8IYB9 648 aa13□□□□□ -0.33
UPF1-205ENST00000598209 ZADH2Q8N4Q0 377 aa13□□□□□ -0.33
UPF1-205ENST00000598209 SIRT6Q8N6T7 355 aa13□□□□□ -0.33
UPF1-205ENST00000598209 CCDC63Q8NA47 563 aa13□□□□□ -0.33
UPF1-205ENST00000598209 CCDC126Q96EE4 140 aa13□□□□□ -0.33
UPF1-205ENST00000598209 ZNF382Q96SR6 550 aa13□□□□□ -0.33
UPF1-205ENST00000598209 SERPINI1Q99574 410 aa13□□□□□ -0.33
UPF1-205ENST00000598209 TRIM4Q9C037 500 aa13□□□□□ -0.33
UPF1-205ENST00000598209 C12orf65Q9H3J6 166 aaKnown RBP13□□□□□ -0.33
UPF1-205ENST00000598209 ELOVL6Q9H5J4 265 aa13□□□□□ -0.33
UPF1-205ENST00000598209 EPS8L2Q9H6S3 715 aa13□□□□□ -0.33
UPF1-205ENST00000598209 PTGFRNQ9P2B2 879 aa13□□□□□ -0.33
UPF1-205ENST00000598209 TRPS1Q9UHF7 1281 aa13□□□□□ -0.33
UPF1-205ENST00000598209 ZNF225Q9UK10 706 aa13□□□□□ -0.33
UPF1-205ENST00000598209 PPT2Q9UMR5 302 aa13□□□□□ -0.33
UPF1-205ENST00000598209 A8MUA0 341 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 MLYCDO95822 493 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 UQCRHP07919 91 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 BSGP35613 385 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 SOX11P35716 441 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 SLC26A5P58743 744 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 TLE1Q04724 770 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 SLAMF1Q13291 335 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 MFAP5Q13361 173 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 FAM219BQ5XKK7 198 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 IGFL2Q6UWQ7 119 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 LINC00696Q6ZRV3 163 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 GPRIN3Q6ZVF9 776 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 CLNKQ7Z7G1 428 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 SRRM1Q8IYB3 904 aaKnown RBP12.99□□□□□ -0.33
UPF1-205ENST00000598209 ZCCHC7Q8N3Z6 543 aaKnown RBP12.99□□□□□ -0.33
UPF1-205ENST00000598209 CCNYL1Q8N7R7 359 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 MYRIPQ8NFW9 859 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 RDH11Q8TC12 318 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 M1APQ8TC57 530 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 SELENOMQ8WWX9 145 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 PNPLA2Q96AD5 504 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 APOPT1Q96IL0 206 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 LMF1Q96S06 567 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 TMEM109Q9BVC6 243 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 ZNF717Q9BY31 904 aaPredicted RBP12.99□□□□□ -0.33
UPF1-205ENST00000598209 GSTO2Q9H4Y5 243 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 FARSBQ9NSD9 589 aaKnown RBP12.99□□□□□ -0.33
UPF1-205ENST00000598209 MKS1Q9NXB0 559 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 LUZP4Q9P127 313 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 FBXW2Q9UKT8 454 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 SNX6Q9UNH7 406 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 STK38LQ9Y2H1 464 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 CLDN16Q9Y5I7 305 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 SPACA6W5XKT8 324 aa12.99□□□□□ -0.33
UPF1-205ENST00000598209 A0A0A6YYD5 115 aa12.98□□□□□ -0.33
UPF1-205ENST00000598209 SAGE2PA6NJ88 616 aa12.98□□□□□ -0.33
UPF1-205ENST00000598209 TGFBR3LH3BV60 316 aa12.98□□□□□ -0.33
UPF1-205ENST00000598209 J3QKU1 62 aa12.98□□□□□ -0.33
UPF1-205ENST00000598209 CTNSO60931 367 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms