RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 TRBV11-1A0A0K0K1C0 115 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 SH3BGRLO75368 114 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 UNC5CO95185 931 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 KLHL2O95198 593 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 ACSL3O95573 720 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 TGFB1P01137 390 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 CRYABP02511 175 aaKnown RBP12.18□□□□□ -0.46
LIG1-212ENST00000596549 PCNAP12004 261 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 ZNF10P21506 573 aaPredicted RBP12.18□□□□□ -0.46
LIG1-212ENST00000596549 PHBP35232 272 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 OC90Q02509 493 aaPredicted RBP12.18□□□□□ -0.46
LIG1-212ENST00000596549 SLC13A2Q13183 592 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 PFKFB4Q16877 469 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 MED27Q6P2C8 311 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 GFRALQ6UXV0 394 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 GALNTL5Q7Z4T8 443 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 CCDC91Q7Z6B0 441 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 FJX1Q86VR8 437 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 RPS19BP1Q86WX3 136 aaKnown RBP12.18□□□□□ -0.46
LIG1-212ENST00000596549 ZNF595Q8IYB9 648 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 TEX9Q8N6V9 391 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 OR7G3Q8NG95 312 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 DNAJB8Q8NHS0 232 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 SLC44A1Q8WWI5 657 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 NCLNQ969V3 563 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 KCNC2Q96PR1 638 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 PAFAH2Q99487 392 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 FMO2Q99518 471 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 MAPKAP1Q9BPZ7 522 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 TRIM45Q9H8W5 580 aaPredicted RBP12.18□□□□□ -0.46
LIG1-212ENST00000596549 ADAP2Q9NPF8 381 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 PNO1Q9NRX1 252 aaKnown RBP12.18□□□□□ -0.46
LIG1-212ENST00000596549 KCMF1Q9P0J7 381 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 LRFN1Q9P244 771 aa12.18□□□□□ -0.46
LIG1-212ENST00000596549 MTRF1LQ9UGC7 380 aaKnown RBP12.18□□□□□ -0.46
LIG1-212ENST00000596549 MYOCOSA0A1B0GUC4 107 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 SYCE1LA8MT33 242 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 SAP18O00422 153 aaKnown RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 NME2P1O60361 137 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 ZG16O60844 167 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 LDB3O75112 727 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 SLC25A12O75746 678 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 SIX3O95343 332 aaPredicted RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 SP1P08047 785 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 GFAPP14136 432 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 EPB42P16452 691 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 NME2P22392 152 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 HIST1H1TP22492 207 aaPredicted RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 ATP5A1P25705 553 aaKnown RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 EEF1DP29692 281 aaKnown RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 HPDP32754 393 aaPredicted RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 TRHRP34981 398 aaPredicted RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 CLCN2P51788 898 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 ALDH18A1P54886 795 aaKnown RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 ACAP2Q15057 778 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 PCBP2Q15366 365 aaKnown RBP eCLIP12.17□□□□□ -0.465e-7■■■■■ 29.1
LIG1-212ENST00000596549 FAM83EQ2M2I3 478 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 KHDRBS2Q5VWX1 349 aaKnown RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 ZNF787Q6DD87 383 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 ACOT4Q8N9L9 421 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 TMEM178AQ8NBL3 297 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 ARMC2Q8NEN0 867 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 HUS1BQ8NHY5 278 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 THAP3Q8WTV1 239 aaPredicted RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 VMP1Q96GC9 406 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 ZNF717Q9BY31 904 aaPredicted RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 TSPAN10Q9H1Z9 355 aaPredicted RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 VPS11Q9H270 941 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 OR51B5Q9H339 312 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 LYRM4Q9HD34 91 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 DMRT3Q9NQL9 472 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 CPSF2Q9P2I0 782 aaKnown RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 SEC14L3Q9UDX4 400 aa12.17□□□□□ -0.46
LIG1-212ENST00000596549 MRPS33Q9Y291 106 aaKnown RBP12.17□□□□□ -0.46
LIG1-212ENST00000596549 NCKAP5O14513 1909 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 CCDC189A1A4V9 331 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 TMEM200CA6NKL6 621 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 CLDN4O14493 209 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 PLPP1O14494 284 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 ETHE1O95571 254 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 CTAGE8P0CG41 777 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 CD46P15529 392 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 TYK2P29597 1187 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 SSR2P43308 183 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 DDX39BQ13838 428 aaKnown RBP12.16□□□□□ -0.46
LIG1-212ENST00000596549 ELAVL1Q15717 326 aaKnown RBP12.16□□□□□ -0.46
LIG1-212ENST00000596549 HIST2H2ACQ16777 129 aaPredicted RBP12.16□□□□□ -0.46
LIG1-212ENST00000596549 FAM219BQ5XKK7 198 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 HIST2H2AA3Q6FI13 130 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 SLC25A25Q6KCM7 469 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 C16orf47Q6ZP98 133 aaPredicted RBP12.16□□□□□ -0.46
LIG1-212ENST00000596549 GOLGA7Q7Z5G4 137 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 SIAH3Q8IW03 269 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 CTAGE4Q8IX94 777 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 CPSF7Q8N684 471 aaKnown RBP12.16□□□□□ -0.46
LIG1-212ENST00000596549 ZNF321PQ8N8H1 164 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 UHMK1Q8TAS1 419 aaKnown RBP12.16□□□□□ -0.46
LIG1-212ENST00000596549 DCAKDQ8WVC6 231 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 IFT81Q8WYA0 676 aa12.16□□□□□ -0.46
LIG1-212ENST00000596549 UBE2E3Q969T4 207 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms