RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 MLYCDO95822 493 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 TGFB1P01137 390 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 MTHFD2P13995 350 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 CLCN2P51788 898 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 RAP1GDS1P52306 607 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 STX4Q12846 297 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 E2F2Q14209 437 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 TERF2Q15554 542 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 OR1C1Q15619 314 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 METTL2BQ6P1Q9 378 aaKnown RBP11.59□□□□□ -0.55
SS18-225ENST00000585121 SCUBE1Q8IWY4 988 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 AMER2Q8N7J2 671 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 TMEM178AQ8NBL3 297 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 FAM98AQ8NCA5 519 aaKnown RBP11.59□□□□□ -0.55
SS18-225ENST00000585121 OR7G3Q8NG95 312 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 NR4A3Q92570 626 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 ATP6V1E2Q96A05 226 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 SLX1AQ9BQ83 275 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 MS4A8Q9BY19 250 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 LYRM4Q9HD34 91 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 ZNF180Q9UJW8 692 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 DAPP1Q9UN19 280 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 OSGIN2Q9Y236 505 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 UGDHO60701 494 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 CTNSO60931 367 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 TBX6O95947 436 aaPredicted RBP11.58□□□□□ -0.56
SS18-225ENST00000585121 IFNA16P05015 189 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 COL6A2P12110 1019 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 EEF1DP29692 281 aaKnown RBP11.58□□□□□ -0.56
SS18-225ENST00000585121 CD96P40200 585 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 ARL1P40616 181 aaPredicted RBP11.58□□□□□ -0.56
SS18-225ENST00000585121 PIK3CBP42338 1070 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 SSR2P43308 183 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 PER3P56645 1201 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 DDX39BQ13838 428 aaKnown RBP11.58□□□□□ -0.56
SS18-225ENST00000585121 GTF2H2Q13888 395 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 PCBP2Q15366 365 aaKnown RBP eCLIP11.58□□□□□ -0.569e-6■□□□□ 8.7
SS18-225ENST00000585121 KHDRBS2Q5VWX1 349 aaKnown RBP11.58□□□□□ -0.56
SS18-225ENST00000585121 ADNP2Q6IQ32 1131 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 GTF2H2CQ6P1K8 395 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 TMEM132CQ8N3T6 1108 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 KIF2BQ8N4N8 673 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 ACOT4Q8N9L9 421 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 B3GNT7Q8NFL0 401 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 UHMK1Q8TAS1 419 aaKnown RBP11.58□□□□□ -0.56
SS18-225ENST00000585121 TMEM125Q96AQ2 219 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 RGMAQ96B86 450 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 GPR78Q96P69 363 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 TAAR6Q96RI8 345 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 IPPKQ9H8X2 491 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 ADAP2Q9NPF8 381 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 PRDM7Q9NQW5 492 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 KLHL1Q9NR64 748 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 ANKRD10Q9NXR5 420 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 NFU1Q9UMS0 254 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 CLCA3PQ9Y6N3 262 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 POLEQ07864 2286 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 SCN2AQ99250 2005 aa11.58□□□□□ -0.56
SS18-225ENST00000585121 UQCRHLA0A096LP55 91 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 TRBV11-1A0A0K0K1C0 115 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 EXOC1LA0A1B0GW35 172 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 CYR61O00622 381 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 E2F3O00716 465 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 KLK8O60259 260 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 SH3BGRLO75368 114 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 SNRPAP09012 282 aaKnown RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 HIST1H1TP22492 207 aaPredicted RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 ATP5A1P25705 553 aaKnown RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 PTX3P26022 381 aaPredicted RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 TLX1P31314 330 aaPredicted RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 CYB561P49447 251 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 MLF1P58340 268 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 RBPJQ06330 500 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 SERTAD2Q14140 314 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 ELAVL1Q15717 326 aaKnown RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 TECRLQ5HYJ1 363 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 UBAP2Q5T6F2 1119 aaKnown RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 DEPDC1Q5TB30 811 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 SPINK14Q6IE38 97 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 OR4C11Q6IEV9 310 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 GFRALQ6UXV0 394 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 TRMT10CQ7L0Y3 403 aaKnown RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 CLNKQ7Z7G1 428 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 PTGR2Q8N8N7 351 aaPredicted RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 NFAM1Q8NET5 270 aaPredicted RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 HUS1BQ8NHY5 278 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 DAZLQ92904 295 aaKnown RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 ISL2Q96A47 359 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 VMP1Q96GC9 406 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 NPAS2Q99743 824 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 ALOXE3Q9BYJ1 711 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 MS4A12Q9NXJ0 267 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 LRFN1Q9P244 771 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 ERRFI1Q9UJM3 462 aaPredicted RBP11.57□□□□□ -0.56
SS18-225ENST00000585121 FBXW2Q9UKT8 454 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 HIVEP3Q5T1R4 2406 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 SVILO95425 2214 aa11.57□□□□□ -0.56
SS18-225ENST00000585121 TRIM49D1C9J1S8 452 aa11.56□□□□□ -0.56
SS18-225ENST00000585121 SAP18O00422 153 aaKnown RBP11.56□□□□□ -0.56
SS18-225ENST00000585121 RTCAO00442 366 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms