RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 RHAGQ02094 409 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 IL10RAQ13651 578 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 ERV3-1Q14264 604 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 NDUFA9Q16795 377 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 C18orf63Q68DL7 685 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 TRIM40Q6P9F5 258 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 EPGNQ6UW88 154 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 NUDT13Q86X67 352 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 SCUBE1Q8IWY4 988 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 LRRC34Q8IZ02 419 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 CACNA2D3Q8IZS8 1091 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 ENDOVQ8N8Q3 282 aaKnown RBP8.76□□□□□ -1.01
VPS35-211ENST00000569950 OR51Q1Q8NH59 317 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 RFWD2Q8NHY2 731 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 STT3BQ8TCJ2 826 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 NUDT8Q8WV74 236 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 MR1Q95460 341 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 TM4SF18Q96CE8 201 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 EGLN2Q96KS0 407 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 EBF4Q9BQW3 602 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 NPLQ9BXD5 320 aaPredicted RBP8.76□□□□□ -1.01
VPS35-211ENST00000569950 NLNQ9BYT8 704 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 WDR55Q9H6Y2 383 aaPredicted RBP8.76□□□□□ -1.01
VPS35-211ENST00000569950 AKTIPQ9H8T0 292 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 WDR54Q9H977 334 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 CLK4Q9HAZ1 481 aaKnown RBP8.76□□□□□ -1.01
VPS35-211ENST00000569950 ANKHQ9HCJ1 492 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 TXLNGQ9NUQ3 528 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 IRAK4Q9NWZ3 460 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 NDOR1Q9UHB4 597 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 ADAM29Q9UKF5 820 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 CES1P1Q9UKY3 287 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 PADI1Q9ULC6 663 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 USH1CQ9Y6N9 552 aa8.76□□□□□ -1.01
VPS35-211ENST00000569950 A0A1W2PQ72 361 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 URADA6NGE7 173 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 SLC28A1O00337 649 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 AIFM1O95831 613 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 KLK1P06870 262 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 FURINP09958 794 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 RAB40ALP0C0E4 278 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 ZGLP1P0C6A0 271 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 KITP10721 976 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 NEFHP12036 1026 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 CD1EP15812 388 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 SDC1P18827 310 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 TCN2P20062 427 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 EPHA3P29320 983 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 SSR2P43308 183 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 XCR1P46094 333 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 AVPR1BP47901 424 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 ZFP36L2P47974 494 aaKnown RBP8.75□□□□□ -1.01
VPS35-211ENST00000569950 IDH3AP50213 366 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 DIO3P55073 304 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 PCBP4P57723 403 aaKnown RBP8.75□□□□□ -1.01
VPS35-211ENST00000569950 RAB38P57729 211 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 BTG2P78543 158 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 IGLV3-21P80748 117 aaPredicted RBP8.75□□□□□ -1.01
VPS35-211ENST00000569950 DUSP2Q05923 314 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 KLC1Q07866 573 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 SLAMF1Q13291 335 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 DNASE1L3Q13609 305 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 AP5B1Q2VPB7 878 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 ARHGAP40Q5TG30 622 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 OGFOD2Q6N063 350 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 NOXRED1Q6NXP6 359 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 SHISA6Q6ZSJ9 500 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 PROSER1Q86XN7 944 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 KDF1Q8NAX2 398 aaPredicted RBP8.75□□□□□ -1.01
VPS35-211ENST00000569950 SRFBP1Q8NEF9 429 aaKnown RBP8.75□□□□□ -1.01
VPS35-211ENST00000569950 DYDC1Q8WWB3 177 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 ANKRD9Q96BM1 317 aaPredicted RBP8.75□□□□□ -1.01
VPS35-211ENST00000569950 PEX11GQ96HA9 241 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 METTL2AQ96IZ6 378 aaKnown RBP8.75□□□□□ -1.01
VPS35-211ENST00000569950 PPP1R36Q96LQ0 422 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 RBCK1Q9BYM8 510 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 VN1R1Q9GZP7 353 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 CCDC86Q9H6F5 360 aaKnown RBP8.75□□□□□ -1.01
VPS35-211ENST00000569950 LRTM1Q9HBL6 345 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 LYRM4Q9HD34 91 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 MKKSQ9NPJ1 570 aaPredicted RBP8.75□□□□□ -1.01
VPS35-211ENST00000569950 PLSCR2Q9NRY7 297 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 FGFR1OP2Q9NVK5 253 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 C1orf109Q9NX04 203 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 ASIC5Q9NY37 505 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 TRPC4Q9UBN4 977 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 MCM8Q9UJA3 840 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 CDC14AQ9UNH5 594 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 RAXQ9Y2V3 346 aa8.75□□□□□ -1.01
VPS35-211ENST00000569950 POLR3HQ9Y535 204 aaPredicted RBP8.75□□□□□ -1.01
VPS35-211ENST00000569950 CFAP46Q8IYW2 2715 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 GOLGA8QA0A0J9YX86 632 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 GOLGA8OA6NCC3 632 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 C21orf140B9A014 251 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 GOLGA8NF8WBI6 632 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 PGRMC2O15173 223 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 B3GALT2O43825 422 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 PCDH7O60245 1069 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 PEX11AO75192 247 aa8.74□□□□□ -1.01
VPS35-211ENST00000569950 CRCPO75575 148 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms