RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 RECQL5O94762 991 aaPredicted RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 OAZ2O95190 189 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 PGK2P07205 417 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 LINC00614P0C842 121 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 RNF224P0DH78 156 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CBSLP0DN79 551 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 PEPDP12955 493 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CD19P15391 556 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 XRCC1P18887 633 aaPredicted RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 ZNF10P21506 573 aaPredicted RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 CXCR2P25025 360 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 FPR3P25089 353 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 POU1F1P28069 291 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CST5P28325 142 aaPredicted RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 TEAD1P28347 426 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 BDKRB2P30411 391 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CBSP35520 551 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 NAA10P41227 235 aaPredicted RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 PRKCIP41743 596 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 PAFAH1B1P43034 410 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 MAGEB1P43366 347 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 MEOX2P50222 304 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CDK7P50613 346 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 PKNOX1P55347 436 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ACTBP60709 375 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ACTR2P61160 394 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ACTA2P62736 377 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 VSNL1P62760 191 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ACTG1P63261 375 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ACTG2P63267 376 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ACTC1P68032 377 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ACTA1P68133 377 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CSNK1G2P78368 415 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.86□□□□□ -1.63
VPS35-205ENST00000563984 SLC39A6Q13433 755 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 FAM189A2Q15884 450 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 SYT16Q17RD7 645 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 GOLGA7BQ2TAP0 167 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 TMEM35AQ53FP2 167 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 TNFAIP8L3Q5GJ75 292 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 LDLRAP1Q5SW96 308 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 PDSS1Q5T2R2 415 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 GCNT6Q5T4J0 391 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 GPR107Q5VW38 600 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ZNF626Q68DY1 528 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ANKRD26P1Q6NSI1 321 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 SLC18B1Q6NT16 456 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 KLHL35Q6PF15 583 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 FBXO46Q6PJ61 603 aaPredicted RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 ARSKQ6UWY0 536 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 H1FNTQ75WM6 255 aaPredicted RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 P4HA3Q7Z4N8 544 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 SPATA19Q7Z5L4 167 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 BCDIN3DQ7Z5W3 292 aaKnown RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 ZNF589Q86UQ0 364 aaPredicted RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 RALGPS2Q86X27 583 aaPredicted RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 TMC8Q8IU68 726 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 LRRC8AQ8IWT6 810 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 FAM58AQ8N1B3 248 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 GALNT16Q8N428 558 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ANKRD44Q8N8A2 993 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 NHLRC2Q8NBF2 726 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 TMEM35BQ8NCS4 154 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 RBM15BQ8NDT2 890 aaKnown RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 TMEM104Q8NE00 496 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 OR4C15Q8NGM1 316 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 OR8J1Q8NGP2 316 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 OR2L8Q8NGY9 312 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 OR2T3Q8NH03 318 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 NANPQ8TBE9 248 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 AGAP11Q8TF27 550 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 MRGPRFQ96AM1 343 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CTHRC1Q96CG8 243 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 RNFT2Q96EX2 444 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 EEF2KMTQ96G04 330 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 TMEM80Q96HE8 168 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 FAR2Q96K12 515 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 PRRC1Q96M27 445 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CITED1Q99966 193 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 FERMT1Q9BQL6 677 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ZNF251Q9BRH9 671 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 COPS4Q9BT78 406 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ANGPTL4Q9BY76 406 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 RNF41Q9H4P4 317 aaPredicted RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 RNPEPL1Q9HAU8 725 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ZNF302Q9NR11 478 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 PRMT8Q9NR22 394 aaPredicted RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 CTPS2Q9NRF8 586 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ABCB10Q9NRK6 738 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 GIMAP4Q9NUV9 329 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 DNAJB11Q9UBS4 358 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 DKK4Q9UBT3 224 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CDH7Q9ULB5 785 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 PYCARDQ9ULZ3 195 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 DHRS7Q9Y394 339 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 NUP155O75694 1391 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CCDC7Q96M83 1385 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CLIP1P30622 1438 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 MROH2BQ7Z745 1585 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CHD1O14646 1710 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms