RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 TRMT10BQ6PF06 316 aaKnown RBP15.24■□□□□ 0.03
CLN3-208ENST00000561505 C16orf47Q6ZP98 133 aaPredicted RBP15.24■□□□□ 0.03
CLN3-208ENST00000561505 VN1R5Q7Z5H4 357 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 LRRC8AQ8IWT6 810 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.24■□□□□ 0.03
CLN3-208ENST00000561505 NKAPQ8N5F7 415 aaKnown RBP15.24■□□□□ 0.03
CLN3-208ENST00000561505 GOLM1Q8NBJ4 401 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 OR2L5Q8NG80 312 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 RHBDF1Q96CC6 855 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 WDR34Q96EX3 536 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 CCDC77Q9BR77 488 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 TTTY12Q9BZ98 90 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 EHD1Q9H4M9 534 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 PNO1Q9NRX1 252 aaKnown RBP15.24■□□□□ 0.03
CLN3-208ENST00000561505 DAPP1Q9UN19 280 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 TEX264Q9Y6I9 313 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 DNAJC13O75165 2243 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 MAP1AP78559 2803 aaPredicted RBP15.24■□□□□ 0.03
CLN3-208ENST00000561505 A8MVJ9 347 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 PDE9AO76083 593 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 WISP3O95389 354 aaPredicted RBP15.23■□□□□ 0.03
CLN3-208ENST00000561505 GLI4P10075 376 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 ACVR2AP27037 513 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 GGT5P36269 586 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 HK2P52789 917 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 ART1P52961 327 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 DLX5P56178 289 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 E2F2Q14209 437 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 ABHD17CQ6PCB6 329 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 TRILQ7L0X0 811 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 SLC22A16Q86VW1 577 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 NINJ1Q92982 152 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 LRRC39Q96DD0 335 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 FAR2Q96K12 515 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 SGCZQ96LD1 299 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 SERINC2Q96SA4 455 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 FOXC2Q99958 501 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 ZNF559Q9BR84 538 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 IL1RL2Q9HB29 575 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 PRDM7Q9NQW5 492 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 PNPLA3Q9NST1 481 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 HPF1Q9NWY4 346 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 PPP2R2CQ9Y2T4 447 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 L3MBTL1Q9Y468 752 aa15.23■□□□□ 0.03
CLN3-208ENST00000561505 A0A0G2JMM0 328 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 A0A1W2PPB8 328 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 A0A1W2PRS3 328 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 FAM90A27PA6NNH2 459 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 KIR3DP1A8MWS1 328 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 ACOT7O00154 380 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 CES2O00748 559 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 AQP7O14520 342 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 ERI3O43414 337 aaKnown RBP15.22■□□□□ 0.03
CLN3-208ENST00000561505 ZNF354AO60765 605 aaPredicted RBP15.22■□□□□ 0.03
CLN3-208ENST00000561505 PRAMEF4O60810 478 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 SOX3P41225 446 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 LIM2P55344 173 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 CDKL4Q5MAI5 379 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 PRAMEF9Q5VWM5 478 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 IL20RBQ6UXL0 311 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 HSDL2Q6YN16 418 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 RTL4Q6ZR62 310 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 ZC3HC1Q86WB0 502 aaKnown RBP15.22■□□□□ 0.03
CLN3-208ENST00000561505 CLYBLQ8N0X4 340 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 FAM109AQ8N4B1 249 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 TMEM251Q8N6I4 163 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 OR14A16Q8NHC5 309 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 ANKRD49Q8WVL7 239 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 ASB15Q8WXK1 588 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 DAZLQ92904 295 aaKnown RBP15.22■□□□□ 0.03
CLN3-208ENST00000561505 SCYL1Q96KG9 808 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 FAM173AQ9BQD7 235 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 CAPS2Q9BXY5 557 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 SH2D2AQ9NP31 389 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 RYDENQ9NUL5 291 aaKnown RBP15.22■□□□□ 0.03
CLN3-208ENST00000561505 GPRC5BQ9NZH0 403 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 ZNF490Q9ULM2 529 aaPredicted RBP15.22■□□□□ 0.03
CLN3-208ENST00000561505 ERVK-11Q9UQG0 969 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 MRPS33Q9Y291 106 aaKnown RBP15.22■□□□□ 0.03
CLN3-208ENST00000561505 PCDHGB3Q9Y5G1 929 aa15.22■□□□□ 0.03
CLN3-208ENST00000561505 A0A088AWK7 358 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 FIGNL2A6NMB9 653 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 NPIPA2E9PIF3 369 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 NPIPA3F8WFD2 350 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 B3GALT2O43825 422 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 H2AFYO75367 372 aaKnown RBP15.21■□□□□ 0.03
CLN3-208ENST00000561505 CTAG2O75638 210 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 ZNF10P21506 573 aaPredicted RBP15.21■□□□□ 0.03
CLN3-208ENST00000561505 HPDP32754 393 aaPredicted RBP15.21■□□□□ 0.03
CLN3-208ENST00000561505 ELK3P41970 407 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 GDF5P43026 501 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 ZFP36L2P47974 494 aaKnown RBP15.21■□□□□ 0.03
CLN3-208ENST00000561505 IST1P53990 364 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 MTTPP55157 894 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 TAS2R39P59534 338 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 SLBPQ14493 270 aaKnown RBP eCLIP15.21■□□□□ 0.03
CLN3-208ENST00000561505 EFTUD2Q15029 972 aaKnown RBP eCLIP15.21■□□□□ 0.033e-6■■■■□ 20.6
CLN3-208ENST00000561505 MPEG1Q2M385 716 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 ADGRD1Q6QNK2 874 aa15.21■□□□□ 0.03
CLN3-208ENST00000561505 B3GNT6Q6ZMB0 384 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms