RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 GP1BAP07359 652 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 PIM1P11309 404 aaPredicted RBP9.77□□□□□ -0.85
USP3-219ENST00000561326 NELFEP18615 380 aaKnown RBP9.77□□□□□ -0.85
USP3-219ENST00000561326 ME2P23368 584 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 AVPR1BP47901 424 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 PHC1P78364 1004 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 PLIN5Q00G26 463 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 MC1RQ01726 317 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 CFHR1Q03591 330 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 FAM53BQ14153 422 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 MUM1Q2TAK8 710 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 PRTGQ2VWP7 1150 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 DEFB110Q30KQ9 67 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 DEFB134Q4QY38 66 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 NDUFAF5Q5TEU4 345 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 YOD1Q5VVQ6 348 aaPredicted RBP9.77□□□□□ -0.85
USP3-219ENST00000561326 NANOGP8Q6NSW7 305 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 C8orf82Q6P1X6 216 aaPredicted RBP9.77□□□□□ -0.85
USP3-219ENST00000561326 TLDC1Q6P9B6 456 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 CYB5D1Q6P9G0 228 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 DLEU7Q6UYE1 221 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 ZNF793Q6ZN11 406 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 RIPOR1Q6ZS17 1223 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 ZNF621Q6ZSS3 439 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 TICAM1Q8IUC6 712 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 SAMD14Q8IZD0 417 aaPredicted RBP9.77□□□□□ -0.85
USP3-219ENST00000561326 EFCAB3Q8N7B9 438 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 TRIML2Q8N7C3 387 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 TTC29Q8NA56 475 aaPredicted RBP9.77□□□□□ -0.85
USP3-219ENST00000561326 SUMF1Q8NBK3 374 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 DNAJB14Q8TBM8 379 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 NUDT8Q8WV74 236 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 ATOH1Q92858 354 aaPredicted RBP9.77□□□□□ -0.85
USP3-219ENST00000561326 SLC45A3Q96JT2 553 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 SLC41A2Q96JW4 573 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 ZNF285Q96NJ3 590 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 CCDC115Q96NT0 180 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 CGREF1Q99674 301 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 GPATCH1Q9BRR8 931 aaKnown RBP9.77□□□□□ -0.85
USP3-219ENST00000561326 LRFN3Q9BTN0 628 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 THUMPD3Q9BV44 507 aaKnown RBP9.77□□□□□ -0.85
USP3-219ENST00000561326 SYNDIG1Q9H7V2 258 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 NANOGQ9H9S0 305 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 TMEM9BQ9NQ34 198 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 PRDM9Q9NQV7 894 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 GIMAP4Q9NUV9 329 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 TMEM181Q9P2C4 612 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 PDP2Q9P2J9 529 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 NCDNQ9UBB6 729 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.77□□□□□ -0.85
USP3-219ENST00000561326 FBXW2Q9UKT8 454 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 FRYLO94915 3013 aa9.77□□□□□ -0.85
USP3-219ENST00000561326 A0A1W2PRB8 838 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 FITM1A5D6W6 292 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 SH3BP5O60239 455 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 GALR3O60755 368 aaPredicted RBP9.76□□□□□ -0.85
USP3-219ENST00000561326 CPSF4O95639 269 aaKnown RBP9.76□□□□□ -0.85
USP3-219ENST00000561326 ANKRD34CP0C6C1 535 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 ZCCHC18P0CG32 403 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 CPN2P22792 545 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 PPIBP23284 216 aaKnown RBP9.76□□□□□ -0.85
USP3-219ENST00000561326 SLC6A2P23975 617 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 ACP1P24666 158 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 CERS1P27544 350 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 CSF2RBP32927 897 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 GABRA4P48169 554 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 SLC7A2P52569 658 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 ARSFP54793 590 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 MANFP55145 182 aaKnown RBP9.76□□□□□ -0.85
USP3-219ENST00000561326 EEFSECP57772 596 aaKnown RBP9.76□□□□□ -0.85
USP3-219ENST00000561326 ELF3P78545 371 aaPredicted RBP9.76□□□□□ -0.85
USP3-219ENST00000561326 ACY1Q03154 408 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 SPEM2Q0P670 501 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 TRA2AQ13595 282 aaKnown RBP eCLIP9.76□□□□□ -0.85
USP3-219ENST00000561326 SPIDRQ14159 915 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 SF3A2Q15428 464 aaKnown RBP9.76□□□□□ -0.85
USP3-219ENST00000561326 PIGGQ5H8A4 983 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 LRIF1Q5T3J3 769 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 C1orf146Q5VVC0 180 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 ANKRD26P1Q6NSI1 321 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 PGM2L1Q6PCE3 622 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 PRR23CQ6ZRP0 262 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 NET1Q7Z628 596 aaPredicted RBP9.76□□□□□ -0.85
USP3-219ENST00000561326 ANKRD46Q86W74 232 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 BPHLQ86WA6 291 aaPredicted RBP9.76□□□□□ -0.85
USP3-219ENST00000561326 SLC15A3Q8IY34 581 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 AMER3Q8N944 861 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 FAM47BQ8NA70 645 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 TNIP2Q8NFZ5 429 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 OR8J3Q8NGG0 315 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 ZFP28Q8NHY6 868 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 UTP4Q969X6 686 aaKnown RBP9.76□□□□□ -0.85
USP3-219ENST00000561326 ZBED6CLQ96FA7 236 aaPredicted RBP9.76□□□□□ -0.85
USP3-219ENST00000561326 ANKRD27Q96NW4 1050 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 BBS4Q96RK4 519 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 CDC6Q99741 560 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 ECSITQ9BQ95 431 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 NUDT22Q9BRQ3 303 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 SYNPO2LQ9H987 977 aa9.76□□□□□ -0.85
USP3-219ENST00000561326 SLC35C2Q9NQQ7 365 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms