RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CTNSO60931 367 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 SUPT3HO75486 399 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 ITGA10O75578 1167 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 MLYCDO95822 493 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 TGFB1P01137 390 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 SNRPB2P08579 225 aaKnown RBP9.53□□□□□ -0.88
LDLR-214ENST00000560628 SLC35E2BP0CK96 405 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 PCNAP12004 261 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 TNNI3P19429 210 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 ZNF10P21506 573 aaPredicted RBP9.53□□□□□ -0.88
LDLR-214ENST00000560628 GSTM2P28161 218 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 TRHRP34981 398 aaPredicted RBP9.53□□□□□ -0.88
LDLR-214ENST00000560628 MSH2P43246 934 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 MEOX1P50221 254 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 GPR143P51810 404 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 HSD17B7P56937 341 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 ETF1P62495 437 aaKnown RBP9.53□□□□□ -0.88
LDLR-214ENST00000560628 ADORA2A-AS1P86434 159 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 ID2Q02363 134 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 CAV1Q03135 178 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 ART3Q13508 389 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 LAPTM5Q13571 262 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 ADPRMQ3LIE5 342 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 PAGE2BQ5JRK9 111 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 C3P1Q6ZMU1 363 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 NCCRP1Q6ZVX7 275 aaPredicted RBP9.53□□□□□ -0.88
LDLR-214ENST00000560628 UBE3DQ7Z6J8 389 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 TBC1D1Q86TI0 1168 aaPredicted RBP9.53□□□□□ -0.88
LDLR-214ENST00000560628 SULF2Q8IWU5 870 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 ZNF595Q8IYB9 648 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 TMEM156Q8N614 296 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 PDPRQ8NCN5 879 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 WDR34Q96EX3 536 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 VMP1Q96GC9 406 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 SEC16BQ96JE7 1060 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 CCDC77Q9BR77 488 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 EFCAB11Q9BUY7 163 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 ALOXE3Q9BYJ1 711 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 RAB17Q9H0T7 212 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 TRIM45Q9H8W5 580 aaPredicted RBP9.53□□□□□ -0.88
LDLR-214ENST00000560628 NMRAL1Q9HBL8 299 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 IGSF5Q9NSI5 407 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 KCMF1Q9P0J7 381 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 DAPP1Q9UN19 280 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 MRPS33Q9Y291 106 aaKnown RBP9.53□□□□□ -0.88
LDLR-214ENST00000560628 ZNF835Q9Y2P0 537 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 UNC79Q9P2D8 2635 aa9.52□□□□□ -0.88
LDLR-214ENST00000560628 ESYT3A0FGR9 886 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 PEX1O43933 1283 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 LDB3O75112 727 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 ZFAND5O76080 213 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 PDE9AO76083 593 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 LTA4HP09960 611 aaKnown RBP9.52□□□□□ -0.89
LDLR-214ENST00000560628 ABOP16442 354 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 ZNF24P17028 368 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 ATP5A1P25705 553 aaKnown RBP9.52□□□□□ -0.89
LDLR-214ENST00000560628 HTR1EP28566 365 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 CRABP2P29373 138 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 HPDP32754 393 aaPredicted RBP9.52□□□□□ -0.89
LDLR-214ENST00000560628 STX2P32856 288 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 PTGER1P34995 402 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 GPR85P60893 370 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 IRF9Q00978 393 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 GUCY2DQ02846 1103 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 TGM3Q08188 693 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 STX4Q12846 297 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 TBCCQ15814 346 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 MROH9Q5TGP6 573 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 MED27Q6P2C8 311 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 MTFR2Q6P444 385 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 ZNF793Q6ZN11 406 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 Q6ZPB1 254 aaPredicted RBP9.52□□□□□ -0.89
LDLR-214ENST00000560628 LRRC70Q7Z2Q7 622 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 MDGA2Q7Z553 956 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 FGD2Q7Z6J4 655 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 DOLPP1Q86YN1 238 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 CYP4Z2PQ8N1L4 340 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 ARMC10Q8N2F6 343 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 GHDCQ8N2G8 530 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 TMEM132CQ8N3T6 1108 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 RNF175Q8N4F7 328 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 ZNF808Q8N4W9 903 aaPredicted RBP9.52□□□□□ -0.89
LDLR-214ENST00000560628 TEX9Q8N6V9 391 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 ZNF321PQ8N8H1 164 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 ACOT4Q8N9L9 421 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 ZNF473Q8WTR7 871 aaKnown RBP9.52□□□□□ -0.89
LDLR-214ENST00000560628 KCTD4Q8WVF5 259 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 KCNC2Q96PR1 638 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 ATOH8Q96SQ7 321 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 MAPKAP1Q9BPZ7 522 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 SORBS1Q9BX66 1292 aaKnown RBP9.52□□□□□ -0.89
LDLR-214ENST00000560628 MS4A8Q9BY19 250 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 ADAP2Q9NPF8 381 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 NUDT4Q9NZJ9 180 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 OPTCQ9UBM4 332 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 PPIEQ9UNP9 301 aaKnown RBP9.52□□□□□ -0.89
LDLR-214ENST00000560628 KLF13Q9Y2Y9 288 aaPredicted RBP9.52□□□□□ -0.89
LDLR-214ENST00000560628 ACOT9Q9Y305 439 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 CLCA3PQ9Y6N3 262 aa9.52□□□□□ -0.89
LDLR-214ENST00000560628 CREBBPQ92793 2442 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms