RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 KLK2P20151 261 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 MAGP20916 626 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 MST1P26927 711 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 EPHA3P29320 983 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 FOLR3P41439 243 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 MXRA7P84157 204 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 BTKQ06187 659 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 AIMP2Q13155 320 aaKnown RBP11.84□□□□□ -0.51
SHMT2-230ENST00000557427 TSTA3Q13630 321 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-230ENST00000557427 TSNQ15631 228 aaKnown RBP11.84□□□□□ -0.51
SHMT2-230ENST00000557427 C1orf189Q5VU69 101 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 AGAP7PQ5VUJ5 663 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 FIGLAQ6QHK4 219 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 CHSY3Q70JA7 882 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 MCATQ8IVS2 390 aaKnown RBP11.84□□□□□ -0.51
SHMT2-230ENST00000557427 CLYBLQ8N0X4 340 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 DNAJC22Q8N4W6 341 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 RAB42Q8N4Z0 105 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 ZNF655Q8N720 491 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-230ENST00000557427 OR2Y1Q8NGV0 311 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 GIMAP7Q8NHV1 300 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 ADAMTS18Q8TE60 1221 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 AGAP11Q8TF27 550 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 NRGNQ92686 78 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 EXT2Q93063 718 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 SLC22A18Q96BI1 424 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 LINGO1Q96FE5 620 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 AGAP4Q96P64 663 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 TREX2Q9BQ50 279 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-230ENST00000557427 DPH2Q9BQC3 489 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-230ENST00000557427 SHCBP1LQ9BZQ2 653 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 DENND2DQ9H6A0 471 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-230ENST00000557427 SLC6A20Q9NP91 592 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 DLL4Q9NR61 685 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 IKZF3Q9UKT9 509 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 ANKRD12Q6UB98 2062 aa11.83□□□□□ -0.51
SHMT2-230ENST00000557427 NUP210LQ5VU65 1888 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 NPEPPSL1A6NEC2 478 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 TMEM233B4DJY2 109 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 CDC7O00311 574 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 UBFD1O14562 309 aaKnown RBP11.83□□□□□ -0.52
SHMT2-230ENST00000557427 MATN4O95460 622 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 CLDN14O95500 239 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 JUNP05412 331 aaKnown RBP11.83□□□□□ -0.52
SHMT2-230ENST00000557427 AGAP20933 346 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 ALAS2P22557 587 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 PIK3R1P27986 724 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 GABRA4P48169 554 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 CSNK1G2P78368 415 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 FASTKQ14296 549 aaKnown RBP11.83□□□□□ -0.52
SHMT2-230ENST00000557427 PFKFB4Q16877 469 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 PRAMEF13Q5VWM6 474 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 MTFR2Q6P444 385 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 NET1Q7Z628 596 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-230ENST00000557427 SCUBE1Q8IWY4 988 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 CPNE9Q8IYJ1 553 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 OR1N1Q8NGS0 311 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 FBXO27Q8NI29 283 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 RP9Q8TA86 221 aaKnown RBP11.83□□□□□ -0.52
SHMT2-230ENST00000557427 ZNF483Q8TF39 744 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-230ENST00000557427 EEF1AKMT1Q8WVE0 214 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 ACAT2Q9BWD1 397 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 REPIN1Q9BWE0 567 aaKnown RBP11.83□□□□□ -0.52
SHMT2-230ENST00000557427 CXXC4Q9H2H0 198 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 RNPEPL1Q9HAU8 725 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 NUDT4Q9NZJ9 180 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 KLHL42Q9P2K6 505 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 FBXL4Q9UKA2 621 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 PLCL2Q9UPR0 1127 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 RPH3AQ9Y2J0 694 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-230ENST00000557427 VPS13CQ709C8 3753 aa11.83□□□□□ -0.52
SHMT2-230ENST00000557427 H3BMH7 237 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 CIB2O75838 187 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 KLHL18O94889 574 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 HBQ1P09105 142 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 MSL3P1P0C860 447 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 AGXTP21549 392 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 PSMB5P28074 263 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 EEF1DP29692 281 aaKnown RBP11.82□□□□□ -0.52
SHMT2-230ENST00000557427 RGS4P49798 205 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 ATP4BP51164 291 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 IST1P53990 364 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 YBX1P67809 324 aaKnown RBP11.82□□□□□ -0.52
SHMT2-230ENST00000557427 IRX1P78414 480 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-230ENST00000557427 CLCQ05315 142 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 LCP2Q13094 533 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 GBX1Q14549 363 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 SLC9A5Q14940 896 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 CYP2A13Q16696 494 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 TTLL9Q3SXZ7 439 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 C6orf163Q5TEZ5 329 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 KANK2Q63ZY3 851 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 NXNQ6DKJ4 435 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 MRPL14Q6P1L8 145 aaKnown RBP11.82□□□□□ -0.52
SHMT2-230ENST00000557427 SUSD1Q6UWL2 747 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 CYHR1Q6ZMK1 362 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 NCCRP1Q6ZVX7 275 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-230ENST00000557427 ADAMTSL2Q86TH1 951 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 GPSM1Q86YR5 675 aa11.82□□□□□ -0.52
SHMT2-230ENST00000557427 POU5F2Q8N7G0 328 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms