RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 KRTCAP3Q53RY4 240 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 ACER2Q5QJU3 275 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 ANKRD22Q5VYY1 191 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 CRLF3Q8IUI8 442 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 PLD3Q8IV08 490 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 SIAH3Q8IW03 269 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 DENND6AQ8IWF6 608 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 CPSF7Q8N684 471 aaKnown RBP9.38□□□□□ -0.91
SCFD1-220ENST00000556486 CAMKVQ8NCB2 501 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 PLPP5Q8NEB5 264 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 OR51Q1Q8NH59 317 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 M1APQ8TC57 530 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 CALML6Q8TD86 181 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 MCOLN3Q8TDD5 553 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 SCMH1Q96GD3 660 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 ZNF354BQ96LW1 612 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 SERPINB12Q96P63 405 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 OR1F2PQ96R84 312 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 GPR21Q99679 349 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 NPAS2Q99743 824 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 FOXC2Q99958 501 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 VKORC1Q9BQB6 163 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 SGPP1Q9BX95 441 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 CCDC68Q9H2F9 335 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 CXXC4Q9H2H0 198 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 DLL4Q9NR61 685 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 ZNF180Q9UJW8 692 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 RNF6Q9Y252 685 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 RPH3AQ9Y2J0 694 aaPredicted RBP9.38□□□□□ -0.91
SCFD1-220ENST00000556486 ASB1Q9Y576 335 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 PCDHA9Q9Y5H5 950 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 ABCA4P78363 2273 aa9.38□□□□□ -0.91
SCFD1-220ENST00000556486 NSD1Q96L73 2696 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-220ENST00000556486 CTAGE9A4FU28 777 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 MAGEB17A8MXT2 336 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 PRRG2O14669 202 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 SLC16A5O15375 505 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 OIP5O43482 229 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 CDC40O60508 579 aaKnown RBP eCLIP9.37□□□□□ -0.91
SCFD1-220ENST00000556486 TOXO94900 526 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 MLYCDO95822 493 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 C8GP07360 202 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 XCR1P46094 333 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 MPP1Q00013 466 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 TIAL1Q01085 375 aaKnown RBP eCLIP9.37□□□□□ -0.91
SCFD1-220ENST00000556486 RHAGQ02094 409 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 OC90Q02509 493 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-220ENST00000556486 GPS1Q13098 491 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 CTBP1Q13363 440 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 CUL1Q13616 776 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 TSTA3Q13630 321 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-220ENST00000556486 THOC5Q13769 683 aaKnown RBP9.37□□□□□ -0.91
SCFD1-220ENST00000556486 MLC1Q15049 377 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 CYP1B1Q16678 543 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 MEP1AQ16819 746 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 PRSS53Q2L4Q9 553 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 THEMIS2Q5TEJ8 643 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 TMEM198Q66K66 360 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 NXNQ6DKJ4 435 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 CASC4Q6P4E1 433 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 ACAD11Q709F0 780 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 PRSS41Q7RTY9 318 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 PIWIL4Q7Z3Z4 852 aaKnown RBP9.37□□□□□ -0.91
SCFD1-220ENST00000556486 ADCK2Q7Z695 626 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 ANKRD37Q7Z713 158 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 PRIMA1Q86XR5 153 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 KIF18BQ86Y91 864 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 PDSS2Q86YH6 399 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 CPNE9Q8IYJ1 553 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 ARMC10Q8N2F6 343 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 GHDCQ8N2G8 530 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 AGGF1Q8N302 714 aaeCLIP9.37□□□□□ -0.91
SCFD1-220ENST00000556486 RASGEF1CQ8N431 466 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 ABHD11Q8NFV4 315 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 OR4K1Q8NGD4 311 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 SIGLEC10Q96LC7 697 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 CCDC138Q96M89 665 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 UTP23Q9BRU9 249 aaKnown RBP9.37□□□□□ -0.91
SCFD1-220ENST00000556486 ASPNQ9BXN1 380 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 KCNK13Q9HB14 408 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 FBXO6Q9NRD1 293 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-220ENST00000556486 LANCL2Q9NS86 450 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 LRFN1Q9P244 771 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 FBXO5Q9UKT4 447 aa9.37□□□□□ -0.91
SCFD1-220ENST00000556486 A0A1B0GTH9 108 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 GOLGA6L6A8MZA4 724 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 CEP104O60308 925 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 SYF2O95926 243 aaKnown RBP9.36□□□□□ -0.91
SCFD1-220ENST00000556486 CCDC175P0C221 793 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 SLC35G6P0C7Q6 338 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 NPPBP16860 134 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 ZNF24P17028 368 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 IL1RNP18510 177 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 COILP38432 576 aaPredicted RBP9.36□□□□□ -0.91
SCFD1-220ENST00000556486 ADAM8P78325 824 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 HERC3Q15034 1050 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 MAPKAPK3Q16644 382 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 MINDY4Q4G0A6 757 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 CES4AQ5XG92 561 aa9.36□□□□□ -0.91
SCFD1-220ENST00000556486 PPP4R4Q6NUP7 873 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms