RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 MILR1Q7Z6M3 343 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 CRLF3Q8IUI8 442 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 KLHDC8AQ8IYD2 350 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 ADGRF3Q8IZF5 1079 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 KIRREL3Q8IZU9 778 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 LINC01555Q8NAE3 123 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 OR11G2Q8NGC1 345 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 DNAJB8Q8NHS0 232 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 SLC5A11Q8WWX8 675 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 NANOS1Q8WY41 292 aaKnown RBP11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 SPSB2Q99619 263 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 MESP1Q9BRJ9 268 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 NDC1Q9BTX1 674 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 MENTQ9BUN1 341 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 SGPP1Q9BX95 441 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 SHCBP1LQ9BZQ2 653 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 GSTO2Q9H4Y5 243 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 DLL4Q9NR61 685 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 INTS7Q9NVH2 962 aaKnown RBP11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 PLA2G3Q9NZ20 509 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 TNFRSF10DQ9UBN6 386 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 ZNF835Q9Y2P0 537 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 FIS1Q9Y3D6 152 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 ASB1Q9Y576 335 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 MXRA5Q9NR99 2828 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 CSPG4Q6UVK1 2322 aa11.8□□□□□ -0.52
CLSTN3-208ENST00000538933 KLF11O14901 512 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 MAP3K7O43318 606 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 SLC19A2O60779 497 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 LYPLA1O75608 230 aaPredicted RBP11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 CDH1P12830 882 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 UGT2B7P16662 529 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 KLK2P20151 261 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 HMOX2P30519 316 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 DNAJA1P31689 397 aaKnown RBP11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 GRK3P35626 688 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 SOX11P35716 441 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 PKNOX1P55347 436 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 CHIT1Q13231 466 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 HIST2H2ACQ16777 129 aaPredicted RBP11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 XKR6Q5GH73 641 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 ARL13AQ5H913 290 aaPredicted RBP11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 PAGE2BQ5JRK9 111 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 IRAK1BP1Q5VVH5 260 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 HIST2H2AA3Q6FI13 130 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 MEX3BQ6ZN04 569 aaKnown RBP11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 FAM47EQ6ZV65 393 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 OVCH1Q7RTY7 1134 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 LRRC56Q8IYG6 542 aaPredicted RBP11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 TBC1D19Q8N5T2 526 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 AGR3Q8TD06 166 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 CCT6BQ92526 530 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 HAS2Q92819 552 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 CHRNA10Q9GZZ6 450 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 NSRP1Q9H0G5 558 aaKnown RBP11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 WDR54Q9H977 334 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 SPHK1Q9NYA1 384 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 TINAGQ9UJW2 476 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 RPH3AQ9Y2J0 694 aaPredicted RBP11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 PCDHGB6Q9Y5F9 930 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 FN1P02751 2386 aaKnown RBP11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 ATRQ13535 2644 aa11.79□□□□□ -0.52
CLSTN3-208ENST00000538933 ZANQ9Y493 2812 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 TRAV17A0A0B4J275 112 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 A0A0J9YY10 115 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 TMEM200CA6NKL6 621 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 ZSCAN9O15535 394 aaPredicted RBP11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 ITM2AO43736 263 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 OR4F21O95013 312 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 FKBP9O95302 570 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 CLDN9O95484 217 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 CHEK2O96017 543 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 CHRNGP07510 517 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 NPPBP16860 134 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 IGFBP2P18065 325 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 HRH2P25021 359 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 CXCR2P25025 360 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 CCR8P51685 355 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 IST1P53990 364 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 PRDX1Q06830 199 aaKnown RBP11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 LAPTM5Q13571 262 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 NKG7Q16617 165 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 DEFB110Q30KQ9 67 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 SH2D4BQ5SQS7 431 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 SPESP1Q6UW49 350 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 Q6ZPB1 254 aaPredicted RBP11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 COX15Q7KZN9 410 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 HOMEZQ8IX15 550 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 FAM20CQ8IXL6 584 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 KRT78Q8N1N4 520 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 ZNF655Q8N720 491 aaPredicted RBP11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 OR2L3Q8NG85 312 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 OR4F6Q8NGB9 312 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 NEIL2Q969S2 332 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 FKBP10Q96AY3 582 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 CDK15Q96Q40 435 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 OR4K3Q96R72 315 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 ZNF382Q96SR6 550 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 MDFIQ99750 246 aa11.78□□□□□ -0.52
CLSTN3-208ENST00000538933 FOXC2Q99958 501 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms