RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 CHUKO15111 745 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 FMO6PO60774 539 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 RTN2O75298 545 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 SAP30O75446 220 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 SFTPBP07988 381 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 DLATP10515 647 aaKnown RBP2.3□□□□□ -2.04
CD44-238ENST00000534296 KRT3P12035 628 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 AOC1P19801 751 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 C4BPBP20851 252 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 FEN1P39748 380 aaKnown RBP2.3□□□□□ -2.04
CD44-238ENST00000534296 SOX3P41225 446 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 SERPINH1P50454 418 aaKnown RBP2.3□□□□□ -2.04
CD44-238ENST00000534296 KIAA1024LP59773 190 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 FKBP1BP68106 108 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 GFPT1Q06210 699 aaPredicted RBP2.3□□□□□ -2.04
CD44-238ENST00000534296 PPP1R8Q12972 351 aaKnown RBP2.3□□□□□ -2.04
CD44-238ENST00000534296 RPA4Q13156 261 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 ZNF177Q13360 481 aaPredicted RBP2.3□□□□□ -2.04
CD44-238ENST00000534296 KRT31Q15323 416 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 FAM189A2Q15884 450 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 EXT1Q16394 746 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 AGAP6Q5VW22 663 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 ZNF343Q6P1L6 599 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 PODNL1Q6PEZ8 512 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 TMEM270Q6UE05 265 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 NHLRC1Q6VVB1 395 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 TMEM64Q6YI46 380 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 GDPGP1Q6ZNW5 385 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 CPEB2Q7Z5Q1 589 aaKnown RBP2.3□□□□□ -2.04
CD44-238ENST00000534296 FAM131BQ86XD5 332 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 Q8N377 158 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 TEX26Q8N6G2 289 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 OR9Q2Q8NGE9 314 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 OR10G7Q8NGN6 311 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 SPATA18Q8TC71 538 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 UBE2Q2Q8WVN8 375 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 SNRNP40Q96DI7 357 aaKnown RBP2.3□□□□□ -2.04
CD44-238ENST00000534296 BPIFA2Q96DR5 249 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 ATXN7L3BQ96GX2 97 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 C2orf48Q96LS8 159 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 PRMT1Q99873 361 aaKnown RBP2.3□□□□□ -2.04
CD44-238ENST00000534296 ATF6BQ99941 703 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 CHCHD5Q9BSY4 110 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 ACAT2Q9BWD1 397 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 CACNG6Q9BXT2 260 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 ZNF350Q9GZX5 532 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 ZCCHC3Q9NUD5 404 aaKnown RBP2.3□□□□□ -2.04
CD44-238ENST00000534296 GTSE1Q9NYZ3 720 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 CNIH4Q9P003 139 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 ZNF319Q9P2F9 582 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 KLK11Q9UBX7 282 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 MAD2L2Q9UI95 211 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.3□□□□□ -2.04
CD44-238ENST00000534296 EXOC7Q9UPT5 735 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 KCNK6Q9Y257 313 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 EXOC6BQ9Y2D4 811 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 ZNF510Q9Y2H8 683 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 SH3GLB1Q9Y371 365 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 TMED7Q9Y3B3 224 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 KLK4Q9Y5K2 254 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 ETV7Q9Y603 341 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 AUP1Q9Y679 476 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 HEG1Q9ULI3 1381 aa2.3□□□□□ -2.04
CD44-238ENST00000534296 IGHV4-30-2A0A087WSY4 118 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 A0A087X0K7 114 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 SMIM30A4D0T7 59 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 TRIM49BA6NDI0 452 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 ANKDD1BA6NHY2 528 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 ACOD1A6NK06 481 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 EPM2AB3EWF7 344 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 ZNF732B4DXR9 585 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 TRAFD1O14545 582 aaPredicted RBP2.29□□□□□ -2.04
CD44-238ENST00000534296 MAGEB2O15479 319 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 B4GAT1O43505 415 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 KERAO60938 352 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 POP4O95707 220 aaKnown RBP2.29□□□□□ -2.04
CD44-238ENST00000534296 SKILP12757 684 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 ANPEPP15144 967 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 STMN1P16949 149 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 CAPN2P17655 700 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 GATA2P23769 480 aaPredicted RBP2.29□□□□□ -2.04
CD44-238ENST00000534296 CALML3P27482 149 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 KHKP50053 298 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 GEMP55040 296 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 KRTAP10-3P60369 221 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 RBBP4Q09028 425 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 NPRL3Q12980 569 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 CBX3Q13185 183 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 KIAA0141Q14154 515 aaPredicted RBP2.29□□□□□ -2.04
CD44-238ENST00000534296 LY6DQ14210 128 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 MTF1Q14872 753 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 STXBP2Q15833 593 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 CARTPTQ16568 116 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 ECSCRQ19T08 205 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 SLC25A30Q5SVS4 291 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 FAM182AQ5T1J6 154 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 SUSD4Q5VX71 490 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 KLHL10Q6JEL2 608 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 CD164L2Q6UWJ8 174 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 CATSPER3Q86XQ3 398 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms