RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 NAA20P61599 178 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 SGO1Q5FBB7 561 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 TNFAIP8L3Q5GJ75 292 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 GPRIN3Q6ZVF9 776 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 PTRH1Q86Y79 214 aaKnown RBP18.66■□□□□ 0.58
CPSF1-209ENST00000532725 KBTBD2Q8IY47 623 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 CCDC63Q8NA47 563 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 ARMC2Q8NEN0 867 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 ADAMTS18Q8TE60 1221 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 THOC3Q96J01 351 aaKnown RBP18.66■□□□□ 0.58
CPSF1-209ENST00000532725 SMC6Q96SB8 1091 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 SERPINI1Q99574 410 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 CENPKQ9BS16 269 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 LHPPQ9H008 270 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 ELOVL6Q9H5J4 265 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 DDX31Q9H8H2 851 aaKnown RBP18.66■□□□□ 0.58
CPSF1-209ENST00000532725 NECTIN3Q9NQS3 549 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 RIC8BQ9NVN3 520 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 C5AR2Q9P296 337 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 SLC17A7Q9P2U7 560 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 G3BP2Q9UN86 482 aaKnown RBP18.66■□□□□ 0.58
CPSF1-209ENST00000532725 SNX6Q9UNH7 406 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 ZNF451Q9Y4E5 1061 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 MMACHCQ9Y4U1 282 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 CLDN16Q9Y5I7 305 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 NUP210LQ5VU65 1888 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 RGS16O15492 202 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-209ENST00000532725 TYROBPO43914 113 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 KLHL41O60662 606 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 ERLIN1O75477 346 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 SEC24DO94855 1032 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-209ENST00000532725 ESRRBO95718 433 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 PDYNP01213 254 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 SERPINA7P05543 415 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 PRR35P0CG20 571 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 ICAM2P13598 275 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 SSR2P43308 183 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 PKNOX1P55347 436 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 HSD17B7P56937 341 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 SLAMF1Q13291 335 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 RCN2Q14257 317 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 PCLAFQ15004 111 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 SFT2D3Q587I9 215 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 CEP85LQ5SZL2 805 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 VWA5B1Q5TIE3 1220 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 LRIG3Q6UXM1 1119 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 C10orf107Q8IVU9 208 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 SCUBE1Q8IWY4 988 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 ZNF595Q8IYB9 648 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 ZCCHC7Q8N3Z6 543 aaKnown RBP18.65■□□□□ 0.58
CPSF1-209ENST00000532725 CDYL2Q8N8U2 506 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 TCP10LQ8TDR4 215 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 PSMF1Q92530 271 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 CSF3RQ99062 836 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 IQCGQ9H095 443 aaKnown RBP18.65■□□□□ 0.58
CPSF1-209ENST00000532725 SENP1Q9P0U3 644 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 STK38LQ9Y2H1 464 aa18.65■□□□□ 0.58
CPSF1-209ENST00000532725 TNRC6AQ8NDV7 1962 aaKnown RBP18.64■□□□□ 0.58
CPSF1-209ENST00000532725 TCRBV16S1A1N1A0A5B0 115 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 MANBAO00462 879 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 CLDN4O14493 209 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 CTNSO60931 367 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 EEDO75530 441 aaKnown RBP18.64■□□□□ 0.57
CPSF1-209ENST00000532725 SEMA3DO95025 777 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 CELA2AP08217 269 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 OR4D2P58180 307 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 ACTN3Q08043 901 aaPredicted RBP18.64■□□□□ 0.57
CPSF1-209ENST00000532725 TCHHL1Q5QJ38 904 aaPredicted RBP18.64■□□□□ 0.57
CPSF1-209ENST00000532725 LIPMQ5VYY2 423 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 MRM1Q6IN84 353 aaKnown RBP18.64■□□□□ 0.57
CPSF1-209ENST00000532725 RIPOR1Q6ZS17 1223 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 FRMD7Q6ZUT3 714 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 EXOC3L1Q86VI1 746 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 FAM47BQ8NA70 645 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 METTL6Q8TCB7 284 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 AGAP11Q8TF27 550 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 SELENOMQ8WWX9 145 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 FAM111AQ96PZ2 611 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 SLC29A3Q9BZD2 475 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 BRF2Q9HAW0 419 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 ZBTB20Q9HC78 741 aaPredicted RBP18.64■□□□□ 0.57
CPSF1-209ENST00000532725 RRAGDQ9NQL2 400 aaPredicted RBP18.64■□□□□ 0.57
CPSF1-209ENST00000532725 PRTFDC1Q9NRG1 225 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 MID2Q9UJV3 735 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 CNTRLQ7Z7A1 2325 aa18.64■□□□□ 0.57
CPSF1-209ENST00000532725 A0A0A6YYD5 115 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 TGFBR3LH3BV60 316 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 SUV39H1O43463 412 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 TRIM13O60858 407 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 KRT6AP02538 564 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 KRT6BP04259 564 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 KRT6CP48668 564 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 AGAP7PQ5VUJ5 663 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 PLAG1Q6DJT9 500 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 IGFL3Q6UXB1 125 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 CROCCP2Q86T23 111 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 HPS6Q86YV9 775 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 AGAP4Q96P64 663 aa18.63■□□□□ 0.57
CPSF1-209ENST00000532725 GATA5Q9BWX5 397 aaPredicted RBP18.63■□□□□ 0.57
CPSF1-209ENST00000532725 MID1IP1Q9NPA3 183 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms