RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 DEPPQ9NTK1 212 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 NSMCE4AQ9NXX6 385 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 COQ3Q9NZJ6 369 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 DAPP1Q9UN19 280 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 MRPS33Q9Y291 106 aaKnown RBP10.56□□□□□ -0.72
VPS28-214ENST00000531032 HRH3Q9Y5N1 445 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 AKAP9Q99996 3911 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 NCF1BA6NI72 391 aaPredicted RBP10.55□□□□□ -0.72
VPS28-214ENST00000531032 A8MVJ9 347 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 NCF1CA8MVU1 366 aaPredicted RBP10.55□□□□□ -0.72
VPS28-214ENST00000531032 TAPBPO15533 448 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 CDC40O60508 579 aaKnown RBP eCLIP10.55□□□□□ -0.72
VPS28-214ENST00000531032 PRAMEF4O60810 478 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 OR2J2O76002 312 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 NCF1P14598 390 aaPredicted RBP10.55□□□□□ -0.72
VPS28-214ENST00000531032 IGFBP2P18065 325 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 CERS1P27544 350 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 MTTPP55157 894 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 LIM2P55344 173 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 POU4F1Q01851 419 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 EFTUD2Q15029 972 aaKnown RBP eCLIP10.55□□□□□ -0.722e-7■■■■□ 23.3
VPS28-214ENST00000531032 XKR6Q5GH73 641 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 CDKL4Q5MAI5 379 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 PRAMEF9Q5VWM5 478 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 TMEM211Q6ICI0 200 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 ADNP2Q6IQ32 1131 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 TRIM40Q6P9F5 258 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 ABHD17CQ6PCB6 329 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 MEX3BQ6ZN04 569 aaKnown RBP10.55□□□□□ -0.72
VPS28-214ENST00000531032 C16orf47Q6ZP98 133 aaPredicted RBP10.55□□□□□ -0.72
VPS28-214ENST00000531032 CLNKQ7Z7G1 428 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 TCAIMQ8N3R3 496 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 TMEM132CQ8N3T6 1108 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 OR52N2Q8NGI0 321 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 CHTF18Q8WVB6 975 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 WDR34Q96EX3 536 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 TP63Q9H3D4 680 aaPredicted RBP10.55□□□□□ -0.72
VPS28-214ENST00000531032 ZDHHC11Q9H8X9 412 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 CNOT10Q9H9A5 744 aaKnown RBP10.55□□□□□ -0.72
VPS28-214ENST00000531032 MCCC2Q9HCC0 563 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 HPF1Q9NWY4 346 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 KCMF1Q9P0J7 381 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 MYOTQ9UBF9 498 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 RNF14Q9UBS8 474 aa10.55□□□□□ -0.72
VPS28-214ENST00000531032 PINLYPA6NC86 204 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 ANKDD1BA6NHY2 528 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 EFCAB8A8MWE9 144 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 CLGNO14967 610 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 CTNSO60931 367 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 OR6B1O95007 311 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 CD22P20273 847 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 HCFC1P51610 2035 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 SLC12A2P55011 1212 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 RIPPLY3P57055 190 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 TLE4Q04727 773 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 TFF3Q07654 80 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 RCN2Q14257 317 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 TESK1Q15569 626 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 EMC4Q5J8M3 183 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 SULT1C3Q6IMI6 304 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 HSDL2Q6YN16 418 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 RGS9BPQ6ZS82 235 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 ZBED8Q8IZ13 594 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 MORN4Q8NDC4 146 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 OR2M7Q8NG81 312 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 OR8K3Q8NH51 312 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 PTPMT1Q8WUK0 201 aaPredicted RBP10.54□□□□□ -0.72
VPS28-214ENST00000531032 ASB5Q8WWX0 329 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 ASB15Q8WXK1 588 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 DAZLQ92904 295 aaKnown RBP10.54□□□□□ -0.72
VPS28-214ENST00000531032 PTCD3Q96EY7 689 aaKnown RBP10.54□□□□□ -0.72
VPS28-214ENST00000531032 RASL10BQ96S79 203 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 KRT12Q99456 494 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 EFCAB11Q9BUY7 163 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 COPS7BQ9H9Q2 264 aaPredicted RBP10.54□□□□□ -0.72
VPS28-214ENST00000531032 LIN28AQ9H9Z2 209 aaKnown RBP10.54□□□□□ -0.72
VPS28-214ENST00000531032 LYRM4Q9HD34 91 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 PRDM7Q9NQW5 492 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 SMYD2Q9NRG4 433 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 DNAJC11Q9NVH1 559 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 WWOXQ9NZC7 414 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 VTI1BQ9UEU0 232 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 ITGB1BP2Q9UKP3 347 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 ZNF490Q9ULM2 529 aaPredicted RBP10.54□□□□□ -0.72
VPS28-214ENST00000531032 ERVK-11Q9UQG0 969 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 CLCA3PQ9Y6N3 262 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 ZNF407Q9C0G0 2248 aa10.54□□□□□ -0.72
VPS28-214ENST00000531032 PHF3Q92576 2039 aaKnown RBP10.53□□□□□ -0.72
VPS28-214ENST00000531032 A0A0G2JMM0 328 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 A0A1W2PPB8 328 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 A0A1W2PRS3 328 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 KIR3DP1A8MWS1 328 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 ACOT7O00154 380 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 WWP2O00308 870 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 FANCGO15287 622 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 STK16O75716 305 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 PIAS1O75925 651 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 PDE9AO76083 593 aa10.53□□□□□ -0.72
VPS28-214ENST00000531032 GLSO94925 669 aaPredicted RBP10.53□□□□□ -0.72
VPS28-214ENST00000531032 IFNA16P05015 189 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms