RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 C16orf47Q6ZP98 133 aaPredicted RBP9.96□□□□□ -0.82
CD44-227ENST00000528086 CCDC91Q7Z6B0 441 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 CLNKQ7Z7G1 428 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 ATCAYQ86WG3 371 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 FAM26EQ8N5C1 309 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 EFCAB3Q8N7B9 438 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 CEP112Q8N8E3 955 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 ACOT4Q8N9L9 421 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 FAR1Q8WVX9 515 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 TM9SF4Q92544 642 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 VPS50Q96JG6 964 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 SERINC2Q96SA4 455 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 LPAR4Q99677 370 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 EPS8L2Q9H6S3 715 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 KCNK13Q9HB14 408 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 ANKRD10Q9NXR5 420 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 TMEM216Q9P0N5 145 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 C19orf25Q9UFG5 118 aaPredicted RBP9.96□□□□□ -0.82
CD44-227ENST00000528086 EMCNQ9ULC0 261 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 TSC22D4Q9Y3Q8 395 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 MMACHCQ9Y4U1 282 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 CRYBG3Q68DQ2 2970 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 A0A1W2PS29 197 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 URADA6NGE7 173 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 H0YIV9 168 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 B3GALT2O43825 422 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 TMPRSS11DO60235 418 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 VPS4BO75351 444 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 DDAH2O95865 285 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 INHBAP08476 426 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 GFAPP14136 432 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 EPB42P16452 691 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 HIST1H1TP22492 207 aaPredicted RBP9.95□□□□□ -0.82
CD44-227ENST00000528086 JAK1P23458 1154 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 EEF1DP29692 281 aaKnown RBP9.95□□□□□ -0.82
CD44-227ENST00000528086 BSGP35613 385 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 SERPINB9P50453 376 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 NR0B1P51843 470 aaKnown RBP9.95□□□□□ -0.82
CD44-227ENST00000528086 MTTPP55157 894 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 MLF1P58340 268 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 ARG2P78540 354 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 IGLV3-21P80748 117 aaPredicted RBP9.95□□□□□ -0.82
CD44-227ENST00000528086 ID2Q02363 134 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 LAPTM5Q13571 262 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 SLC29A2Q14542 456 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 EXT1Q16394 746 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 RNFT1Q5M7Z0 435 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 ABHD17BQ5VST6 288 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 IRAK1BP1Q5VVH5 260 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 KHDRBS2Q5VWX1 349 aaKnown RBP9.95□□□□□ -0.82
CD44-227ENST00000528086 SPINK14Q6IE38 97 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 CHERPQ8IWX8 916 aaKnown RBP9.95□□□□□ -0.82
CD44-227ENST00000528086 CYP4X1Q8N118 509 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 PTPMT1Q8WUK0 201 aaPredicted RBP9.95□□□□□ -0.82
CD44-227ENST00000528086 PHF21BQ96EK2 531 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 SCMH1Q96GD3 660 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 MAGEB10Q96LZ2 347 aaPredicted RBP9.95□□□□□ -0.82
CD44-227ENST00000528086 MTERF1Q99551 399 aaKnown RBP9.95□□□□□ -0.82
CD44-227ENST00000528086 TSPYL1Q9H0U9 437 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 CDCP1Q9H5V8 836 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 IPPKQ9H8X2 491 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 PRTFDC1Q9NRG1 225 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 VPS4AQ9UN37 437 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 ATG4BQ9Y4P1 393 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 NAV2Q8IVL1 2488 aa9.95□□□□□ -0.82
CD44-227ENST00000528086 A0A0A6YYD5 115 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 TRAV17A0A0B4J275 112 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 EXOC1LA0A1B0GW35 172 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 A0A1W2PPM1 405 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 BLACEA4D250 179 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 ANKUB1A6NFN9 424 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 SYCE1LA8MT33 242 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 A8MT66 165 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 STX16-NPEPL1H3BU86 382 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 HRKO00198 91 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 STX16O14662 325 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 FGF17O60258 216 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 DLX3O60479 287 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 CTNSO60931 367 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 LDB3O75112 727 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 MYO1DO94832 1006 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 LDLRP01130 860 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 S100BP04271 92 aaPredicted RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 SNRPAP09012 282 aaKnown RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 PCNAP12004 261 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 COL6A2P12110 1019 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 TSPAN8P19075 237 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 TPP2P29144 1249 aaPredicted RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 SOX18P35713 384 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 PIK3CBP42338 1070 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 CDH13P55290 713 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 HSD17B7P56937 341 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 ACTN3Q08043 901 aaPredicted RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 DDX39BQ13838 428 aaKnown RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 ZRSR2Q15696 482 aaKnown RBP9.94□□□□□ -0.82
CD44-227ENST00000528086 CPSF6Q16630 551 aaKnown RBP eCLIP9.94□□□□□ -0.82
CD44-227ENST00000528086 UNC50Q53HI1 259 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 PAGE2BQ5JRK9 111 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 LIPJQ5W064 366 aa9.94□□□□□ -0.82
CD44-227ENST00000528086 C18orf63Q68DL7 685 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms