RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 NDUFAF7Q7L592 441 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 CUZD1Q86UP6 607 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 NUDT13Q86X67 352 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 ZNF595Q8IYB9 648 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 CLEC1AQ8NC01 280 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 OR11G2Q8NGC1 345 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 ZBTB9Q96C00 473 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 ATP13A2Q9NQ11 1180 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 PRDM9Q9NQV7 894 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 FARSBQ9NSD9 589 aaKnown RBP13.44□□□□□ -0.26
NUP54-216ENST00000514901 LYARQ9NX58 379 aaKnown RBP13.44□□□□□ -0.26
NUP54-216ENST00000514901 NKIRAS1Q9NYS0 192 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 KCMF1Q9P0J7 381 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 VPS29Q9UBQ0 182 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 PHF11Q9UIL8 331 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 TUBD1Q9UJT1 453 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 SLC12A4Q9UP95 1085 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 TIMM22Q9Y584 194 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 SCN2AQ99250 2005 aa13.44□□□□□ -0.26
NUP54-216ENST00000514901 TMEM120BA0PK00 339 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 ARGFXA6NJG6 315 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 CYR61O00622 381 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 CHEK2O96017 543 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 HPP00738 406 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 NEFHP12036 1026 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 GRK2P25098 689 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 TLX1P31314 330 aaPredicted RBP13.43□□□□□ -0.26
NUP54-216ENST00000514901 HSD17B7P56937 341 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 AP2B1P63010 937 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 RHAGQ02094 409 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 AIMP2Q13155 320 aaKnown RBP13.43□□□□□ -0.26
NUP54-216ENST00000514901 ATMQ13315 3056 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 MPP2Q14168 576 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 NSDHLQ15738 373 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 LINC00303Q3SY05 128 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 ARL13AQ5H913 290 aaPredicted RBP13.43□□□□□ -0.26
NUP54-216ENST00000514901 CYP20A1Q6UW02 462 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 GPR180Q86V85 440 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 TMEM151BQ8IW70 566 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 METTL4Q8N3J2 472 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 OR6Y1Q8NGX8 325 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 PTCHD1Q96NR3 888 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 ZNF717Q9BY31 904 aaPredicted RBP13.43□□□□□ -0.26
NUP54-216ENST00000514901 ACBD3Q9H3P7 528 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 FBXL4Q9UKA2 621 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 G3BP2Q9UN86 482 aaKnown RBP13.43□□□□□ -0.26
NUP54-216ENST00000514901 SPTA1P02549 2419 aa13.43□□□□□ -0.26
NUP54-216ENST00000514901 A0A0A6YYD5 115 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 ARHGAP10A1A4S6 786 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 WDR91A4D1P6 747 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 TMEM114B3SHH9 223 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 FAM227AF5H4B4 570 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 MKRN2OSH3BPM6 223 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 AZIN1O14977 448 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 CTNSO60931 367 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 GUCY1B2O75343 617 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 CDC123O75794 336 aaPredicted RBP13.42□□□□□ -0.26
NUP54-216ENST00000514901 SERPINE1P05121 402 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 ICAM2P13598 275 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 CPN2P22792 545 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 POLE2P56282 527 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 SOX8P57073 446 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 ACTN3Q08043 901 aaPredicted RBP13.42□□□□□ -0.26
NUP54-216ENST00000514901 BIKQ13323 160 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 ABRAXAS2Q15018 415 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 TCHHL1Q5QJ38 904 aaPredicted RBP13.42□□□□□ -0.26
NUP54-216ENST00000514901 FAAH2Q6GMR7 532 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 MRM1Q6IN84 353 aaKnown RBP13.42□□□□□ -0.26
NUP54-216ENST00000514901 RNF165Q6ZSG1 346 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 TRIM46Q7Z4K8 759 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 CPEB2Q7Z5Q1 589 aaKnown RBP13.42□□□□□ -0.26
NUP54-216ENST00000514901 KIRREL3Q8IZU9 778 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 CLYBLQ8N0X4 340 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 ANKRD42Q8N9B4 389 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 ARL8AQ96BM9 186 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 ATP6V1G3Q96LB4 118 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 KCNA7Q96RP8 456 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 SH3GL2Q99962 352 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 PAIP2Q9BPZ3 127 aaKnown RBP13.42□□□□□ -0.26
NUP54-216ENST00000514901 MAPKAP1Q9BPZ7 522 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 RBCK1Q9BYM8 510 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 ZNF700Q9H0M5 742 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 PRTFDC1Q9NRG1 225 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 RIC8BQ9NVN3 520 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 CNTRLQ7Z7A1 2325 aa13.42□□□□□ -0.26
NUP54-216ENST00000514901 IGSF10Q6WRI0 2623 aa13.41□□□□□ -0.26
NUP54-216ENST00000514901 IGHV1-45A0A0A0MS14 117 aa13.41□□□□□ -0.26
NUP54-216ENST00000514901 NSG1A0A0A6YYJ2 146 aa13.41□□□□□ -0.26
NUP54-216ENST00000514901 HMGB1P1B2RPK0 211 aaPredicted RBP13.41□□□□□ -0.26
NUP54-216ENST00000514901 SLC28A1O00337 649 aa13.41□□□□□ -0.26
NUP54-216ENST00000514901 ATXN7O15265 892 aaPredicted RBP13.41□□□□□ -0.26
NUP54-216ENST00000514901 PROM1O43490 865 aa13.41□□□□□ -0.26
NUP54-216ENST00000514901 EEDO75530 441 aaKnown RBP13.41□□□□□ -0.26
NUP54-216ENST00000514901 KLK1P06870 262 aa13.41□□□□□ -0.26
NUP54-216ENST00000514901 FAM58BPP0C7Q3 252 aa13.41□□□□□ -0.26
NUP54-216ENST00000514901 COX6A1P12074 109 aa13.41□□□□□ -0.26
NUP54-216ENST00000514901 PPP2R1BP30154 601 aa13.41□□□□□ -0.26
NUP54-216ENST00000514901 BUD31P41223 144 aaPredicted RBP13.41□□□□□ -0.26
NUP54-216ENST00000514901 CCL11P51671 97 aa13.41□□□□□ -0.26
NUP54-216ENST00000514901 FOXA1P55317 472 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms