RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SIGIRRQ6IA17 410 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 IL27RAQ6UWB1 636 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 AHSA2Q719I0 299 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 FAM129CQ86XR2 697 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF540Q8NDQ6 660 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SNAPC3Q92966 411 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ITPKCQ96DU7 683 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 COX14Q96I36 57 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 FYTTD1Q96QD9 318 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 CSF3RQ99062 836 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 CHCHD6Q9BRQ6 235 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 MALT1Q9UDY8 824 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 VPS4AQ9UN37 437 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 WBP11Q9Y2W2 641 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 IGLV3-16A0A075B6K0 115 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SPTY2D1-AS1A0A0U1RR47 76 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 AGAP14A8MT82 685 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 MTHFD2P13995 350 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 CBLP22681 906 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 CXCR2P25025 360 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC7A1P30825 629 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 RPS3AP61247 264 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 TXNL4AP83876 142 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 MXD1Q05195 221 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 EIF2B5Q13144 721 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 CHIT1Q13231 466 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 HERC3Q15034 1050 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 UNC50Q53HI1 259 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 CYHR1Q6ZMK1 362 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 PLEKHM3Q6ZWE6 761 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC22A9Q8IVM8 553 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 GPR156Q8NFN8 814 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SETD7Q8WTS6 366 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 RAD51AP1Q96B01 352 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 AHCYL2Q96HN2 611 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 NODALQ96S42 347 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 MCMBPQ9BTE3 642 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 THUMPD3Q9BV44 507 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 GSDMCQ9BYG8 508 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SRMSQ9H3Y6 488 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 GAREM1Q9H706 876 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 RUBCNLQ9H714 662 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 GPR34Q9UPC5 381 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SCN3AQ9NY46 2000 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 AHCTF1Q8WYP5 2266 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC5A10A0PJK1 596 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SAGE2PA6NJ88 616 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 DIRAS1O95057 198 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 PVRP15151 417 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 TTKP33981 857 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SHMT2P34897 504 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 BLKP51451 505 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 DEFA1P59665 94 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 DEFA3P59666 94 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 PFN3P60673 137 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 TBPL1P62380 186 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 PPP2R2BQ00005 443 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 PRKAA1Q13131 559 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SPDYE7PQ495Y7 208 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF678Q5SXM1 525 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 CCNYL2Q5T2Q4 361 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 GLYATQ6IB77 296 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ARMC6Q6NXE6 501 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 GOLGA7Q7Z5G4 137 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 AFAP1L2Q8N4X5 818 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ZDHHC1Q8WTX9 485 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ASB11Q8WXH4 323 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 RHNO1Q9BSD3 238 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ANKRD60Q9BZ19 345 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 MMP28Q9H239 520 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 TNFRSF12AQ9NP84 129 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 INTS7Q9NVH2 962 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ACTR3BQ9P1U1 418 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 STOX2Q9P2F5 926 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 MAP10Q9P2G4 905 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 NUFIP1Q9UHK0 495 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 DYRK1BQ9Y463 629 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 HSPB11Q9Y547 144 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ORC6Q9Y5N6 252 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SCN2AQ99250 2005 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 OR6C74A6NCV1 312 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 H7BY64 318 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 C8GP07360 202 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 MAGEA12P43365 314 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ARRB1P49407 418 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 HERVK_113P63132 956 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ABATP80404 500 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 HMGCS1Q01581 520 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 PLK5Q496M5 336 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SPANXN2Q5MJ10 180 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 NKAIN2Q5VXU1 208 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ZDHHC13Q8IUH4 622 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SPERTQ8NA61 448 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC37A2Q8TED4 501 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF480Q8WV37 535 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 ASB12Q8WXK4 309 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 MTERF3Q96E29 417 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 PRAP1Q96NZ9 151 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC38A3Q99624 504 aa8.3□□□□□ -1.08
LIMCH1-209ENST00000509277 CGREF1Q99674 301 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms