RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 IL2P60568 153 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 SLC13A2Q13183 592 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 CRYMQ14894 314 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 SLC25A35Q3KQZ1 300 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 NDUFAF5Q5TEU4 345 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 NXPE4Q6UWF7 544 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 SBSNQ6UWP8 590 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 GK5Q6ZS86 529 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 WDR53Q7Z5U6 358 aaPredicted RBP13.62□□□□□ -0.23
TRAF4-212ENST00000498540 THOC6Q86W42 341 aaKnown RBP13.62□□□□□ -0.23
TRAF4-212ENST00000498540 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.62□□□□□ -0.236e-8■■■■□ 22
TRAF4-212ENST00000498540 FAM109AQ8N4B1 249 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 FAM47BQ8NA70 645 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 ATL1Q8WXF7 558 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 RMND5BQ96G75 393 aaPredicted RBP13.62□□□□□ -0.23
TRAF4-212ENST00000498540 SCYL1Q96KG9 808 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 FAM173AQ9BQD7 235 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 CNPPD1Q9BV87 410 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 TRIM54Q9BYV2 358 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 RASSF1Q9NS23 344 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 HOMER3Q9NSC5 361 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 CRIM1Q9NZV1 1036 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 DYRK1BQ9Y463 629 aa13.62□□□□□ -0.23
TRAF4-212ENST00000498540 MYOCOSA0A1B0GUC4 107 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 ATP6AP2A0A1C7CYW4 349 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 AQP7O14520 342 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 NRDCO43847 1150 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 ZNF354AO60765 605 aaPredicted RBP13.61□□□□□ -0.23
TRAF4-212ENST00000498540 ATP6AP2O75787 350 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 AHSGP02765 367 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 SAT1P21673 171 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 KIR2DL3P43628 341 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 DNASE1L1P49184 302 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 RAB38P57729 211 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 CCZ1BP86790 482 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 CCZ1P86791 482 aaPredicted RBP13.61□□□□□ -0.23
TRAF4-212ENST00000498540 FOXO1Q12778 655 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 PDAP1Q13442 181 aaKnown RBP13.61□□□□□ -0.23
TRAF4-212ENST00000498540 BMPR2Q13873 1038 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 ELAVL1Q15717 326 aaKnown RBP13.61□□□□□ -0.23
TRAF4-212ENST00000498540 C1orf185Q5T7R7 199 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 RTL4Q6ZR62 310 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 ZNF321PQ8N8H1 164 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 GAL3ST3Q96A11 431 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 ALPK1Q96QP1 1244 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 CSF3RQ99062 836 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 IL1RL2Q9HB29 575 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 ACAD8Q9UKU7 415 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 SLC22A14Q9Y267 594 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 VPS13CQ709C8 3753 aa13.61□□□□□ -0.23
TRAF4-212ENST00000498540 CLDN4O14493 209 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 ERI3O43414 337 aaKnown RBP13.6□□□□□ -0.23
TRAF4-212ENST00000498540 WDR1O75083 606 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 BANF1O75531 89 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 ENO2P09104 434 aaPredicted RBP13.6□□□□□ -0.23
TRAF4-212ENST00000498540 CCDC175P0C221 793 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 CCL3P10147 92 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 PGAM1P18669 254 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 ENDOUP21128 410 aaKnown RBP13.6□□□□□ -0.23
TRAF4-212ENST00000498540 CNR1P21554 472 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 DNASE1P24855 282 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 MAN2A2P49641 1150 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 STXBP1P61764 594 aaKnown RBP13.6□□□□□ -0.23
TRAF4-212ENST00000498540 ADAM8P78325 824 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 PPP1R3AQ16821 1122 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 HSDL2Q6YN16 418 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 FAM47EQ6ZV65 393 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 CDC20BQ86Y33 519 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 CNTN4Q8IWV2 1026 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 NAT8LQ8N9F0 302 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 SPC24Q8NBT2 197 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 MS4A6EQ96DS6 147 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 FAR2Q96K12 515 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 QRFPRQ96P65 431 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 NPLQ9BXD5 320 aaPredicted RBP13.6□□□□□ -0.23
TRAF4-212ENST00000498540 SEMA4BQ9NPR2 832 aaPredicted RBP13.6□□□□□ -0.23
TRAF4-212ENST00000498540 TUBA8Q9NY65 449 aaPredicted RBP13.6□□□□□ -0.23
TRAF4-212ENST00000498540 SPRR3Q9UBC9 169 aa13.6□□□□□ -0.23
TRAF4-212ENST00000498540 SUSD5O60279 629 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 IFNA16P05015 189 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 UQCRC1P31930 480 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 HYAL4Q2M3T9 481 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 WLSQ5T9L3 541 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 ZNF595Q8IYB9 648 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 KLHDC8AQ8IYD2 350 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 TMEM132CQ8N3T6 1108 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 GPATCH11Q8N954 259 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 GOLM1Q8NBJ4 401 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 RELL2Q8NC24 303 aaPredicted RBP13.59□□□□□ -0.23
TRAF4-212ENST00000498540 PTPMT1Q8WUK0 201 aaPredicted RBP13.59□□□□□ -0.23
TRAF4-212ENST00000498540 CCT6BQ92526 530 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 SARAFQ96BY9 339 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 OR8D2Q9GZM6 311 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 LDAHQ9H6V9 325 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 LZTFL1Q9NQ48 299 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 DMRT3Q9NQL9 472 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 SACM1LQ9NTJ5 587 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 TRMT1Q9NXH9 659 aaKnown RBP13.59□□□□□ -0.23
TRAF4-212ENST00000498540 ALKBH4Q9NXW9 302 aa13.59□□□□□ -0.23
TRAF4-212ENST00000498540 ATG4BQ9Y4P1 393 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms