RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 DERL2Q9GZP9 239 aa20.54■□□□□ 0.88
HDDC3-203ENST00000494993 REXO4Q9GZR2 422 aaKnown RBP20.54■□□□□ 0.88
HDDC3-203ENST00000494993 EHD1Q9H4M9 534 aa20.54■□□□□ 0.88
HDDC3-203ENST00000494993 KCMF1Q9P0J7 381 aa20.54■□□□□ 0.88
HDDC3-203ENST00000494993 ERVK-11Q9UQG0 969 aa20.54■□□□□ 0.88
HDDC3-203ENST00000494993 TMEM200CA6NKL6 621 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 A8MVJ9 347 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 WISP3O95389 354 aaPredicted RBP20.53■□□□□ 0.88
HDDC3-203ENST00000494993 CAPN3P20807 821 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 SLC12A2P55011 1212 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 LIM2P55344 173 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 TLE4Q04727 773 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 TMEM211Q6ICI0 200 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 ARHGAP11AQ6P4F7 1023 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 C16orf47Q6ZP98 133 aaPredicted RBP20.53■□□□□ 0.88
HDDC3-203ENST00000494993 CEP128Q6ZU80 1094 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 CLNKQ7Z7G1 428 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 GPALPP1Q8IXQ4 340 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 TCAIMQ8N3R3 496 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 TMEM132CQ8N3T6 1108 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 COPS7BQ9H9Q2 264 aaPredicted RBP20.53■□□□□ 0.88
HDDC3-203ENST00000494993 LIN28AQ9H9Z2 209 aaKnown RBP20.53■□□□□ 0.88
HDDC3-203ENST00000494993 DEPPQ9NTK1 212 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 DNAJC11Q9NVH1 559 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 HPF1Q9NWY4 346 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 WWOXQ9NZC7 414 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 DAPP1Q9UN19 280 aa20.53■□□□□ 0.88
HDDC3-203ENST00000494993 CYR61O00622 381 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 CLGNO14967 610 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 TAPBPO15533 448 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 PRAMEF4O60810 478 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 OR2J2O76002 312 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 CERS1P27544 350 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 GGT5P36269 586 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 MTTPP55157 894 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 POU4F1Q01851 419 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 ILF2Q12905 390 aaKnown RBP20.52■□□□□ 0.88
HDDC3-203ENST00000494993 BMPR2Q13873 1038 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 PRAMEF9Q5VWM5 478 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 ADNP2Q6IQ32 1131 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 ABHD17CQ6PCB6 329 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 CREG2Q8IUH2 290 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 ASB5Q8WWX0 329 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 ASB15Q8WXK1 588 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 TP63Q9H3D4 680 aaPredicted RBP20.52■□□□□ 0.88
HDDC3-203ENST00000494993 CNOT10Q9H9A5 744 aaKnown RBP20.52■□□□□ 0.88
HDDC3-203ENST00000494993 SMYD2Q9NRG4 433 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 MYOTQ9UBF9 498 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 ZNF490Q9ULM2 529 aaPredicted RBP20.52■□□□□ 0.88
HDDC3-203ENST00000494993 CLCA3PQ9Y6N3 262 aa20.52■□□□□ 0.88
HDDC3-203ENST00000494993 CTNSO60931 367 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 PDE9AO76083 593 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 OR6B1O95007 311 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 IFNA16P05015 189 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 HSPA7P48741 367 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 RCN2Q14257 317 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 FBXO48Q5FWF7 155 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 XKR6Q5GH73 641 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 CDKL4Q5MAI5 379 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 IL20RBQ6UXL0 311 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 HSDL2Q6YN16 418 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 ZBED8Q8IZ13 594 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 SPATA6LQ8N4H0 392 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 DAZLQ92904 295 aaKnown RBP20.51■□□□□ 0.87
HDDC3-203ENST00000494993 PTCD3Q96EY7 689 aaKnown RBP20.51■□□□□ 0.87
HDDC3-203ENST00000494993 RASL10BQ96S79 203 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 DEFB127Q9H1M4 99 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 CAB39LQ9H9S4 337 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 MCCC2Q9HCC0 563 aa20.51■□□□□ 0.87
HDDC3-203ENST00000494993 MTO1Q9Y2Z2 717 aaKnown RBP20.51■□□□□ 0.87
HDDC3-203ENST00000494993 PINLYPA6NC86 204 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 USP27XA6NNY8 438 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 EFCAB8A8MWE9 144 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 STK16O75716 305 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 PIAS1O75925 651 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 CCDC166P0CW27 439 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 SOX3P41225 446 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 NR0B1P51843 470 aaKnown RBP20.5■□□□□ 0.87
HDDC3-203ENST00000494993 CBLBQ13191 982 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 DOC2AQ14183 400 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 EFTUD2Q15029 972 aaKnown RBP eCLIP20.5■□□□□ 0.87
HDDC3-203ENST00000494993 SULT1C3Q6IMI6 304 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 PAOXQ6QHF9 649 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 CAPN12Q6ZSI9 719 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 GPSM1Q86YR5 675 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 SNX31Q8N9S9 440 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 MORN4Q8NDC4 146 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 OR2M7Q8NG81 312 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 PTPMT1Q8WUK0 201 aaPredicted RBP20.5■□□□□ 0.87
HDDC3-203ENST00000494993 ESAMQ96AP7 390 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 WDR34Q96EX3 536 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 F2RL3Q96RI0 385 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 EFCAB11Q9BUY7 163 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 ALOXE3Q9BYJ1 711 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 PRDM7Q9NQW5 492 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 VTI1BQ9UEU0 232 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 RNF6Q9Y252 685 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 ARHGAP21Q5T5U3 1957 aa20.5■□□□□ 0.87
HDDC3-203ENST00000494993 MYOCOSA0A1B0GUC4 107 aa20.49■□□□□ 0.87
HDDC3-203ENST00000494993 FAM166BA8MTA8 275 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms