RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 HK2P52789 917 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 CDK16Q00536 496 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 CTBP1Q13363 440 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 ELAVL1Q15717 326 aaKnown RBP13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 ZNF750Q32MQ0 723 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 Q5PR19 223 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 HSDL2Q6YN16 418 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 MBOAT1Q6ZNC8 495 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 TMEM132CQ8N3T6 1108 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 TRPV3Q8NET8 790 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 OR8K3Q8NH51 312 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 HES6Q96HZ4 224 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 TSGA10Q9BZW7 698 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 LACRTQ9GZZ8 138 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 EXO5Q9H790 373 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 ZNF703Q9H7S9 590 aaPredicted RBP13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 ALKBH4Q9NXW9 302 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 TUBA8Q9NY65 449 aaPredicted RBP13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 ADAMTS6Q9UKP5 1117 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 ATG4BQ9Y4P1 393 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 EPN1Q9Y6I3 576 aaPredicted RBP13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 DOCK7Q96N67 2140 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 CTAGE9A4FU28 777 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 TGFBR3LH3BV60 316 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 WWP2O00308 870 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 IPO7O95373 1038 aaKnown RBP13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 EPPINO95925 133 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 HRGP04196 525 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 P04436 131 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 ZSCAN5DPP0CG00 497 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 TPSB2P20231 275 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 PPP2R1BP30154 601 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 DNASE1L1P49184 302 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 RAB8AP61006 207 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 BASP1P80723 227 aaKnown RBP13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 PPP2R2BQ00005 443 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 REEP5Q00765 189 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 DHX9Q08211 1270 aaKnown RBP13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 TPSAB1Q15661 275 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 DUPD1Q68J44 220 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 OPN5Q6U736 354 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 PRSS57Q6UWY2 283 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 CAPN12Q6ZSI9 719 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 LACC1Q8IV20 430 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 SPNS2Q8IVW8 549 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 OR56A3Q8NH54 315 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 ALKBH8Q96BT7 664 aaKnown RBP13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 SNF8Q96H20 258 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 PIP5K1AQ99755 562 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 NPLQ9BXD5 320 aaPredicted RBP13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 RHBGQ9H310 441 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 LIN28AQ9H9Z2 209 aaKnown RBP13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 ACKR4Q9NPB9 350 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 QPCTLQ9NXS2 382 aa13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 REXO2Q9Y3B8 237 aaKnown RBP13.15□□□□□ -0.3
PRPF40A-211ENST00000493468 CHD3Q12873 2000 aaKnown RBP13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 AHRRA9YTQ3 701 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 C4orf51C9J302 202 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 H7C1Q1 480 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 CLDN4O14493 209 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 SERPINA6P08185 405 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 CCL3P10147 92 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 RGS4P49798 205 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 TBL3Q12788 808 aaKnown RBP13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 PHKG1Q16816 387 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 ACSF3Q4G176 576 aaPredicted RBP13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 DENND6AQ8IWF6 608 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 PALM2Q8IXS6 379 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 LMNTD2Q8IXW0 634 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 ZNF595Q8IYB9 648 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 CIARTQ8N365 385 aaPredicted RBP13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 LRRC25Q8N386 305 aaPredicted RBP13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 ANKRD53Q8N9V6 530 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 MORN4Q8NDC4 146 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 TNIP2Q8NFZ5 429 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 NEIL3Q8TAT5 605 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 C1orf54Q8WWF1 131 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 SMPDL3BQ92485 455 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 DAZLQ92904 295 aaKnown RBP13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 OR4K3Q96R72 315 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 YIPF4Q9BSR8 244 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 BDH2Q9BUT1 245 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 SPNS1Q9H2V7 528 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 SH2D2AQ9NP31 389 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 FBXO6Q9NRD1 293 aaPredicted RBP13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 PRTFDC1Q9NRG1 225 aa13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.14□□□□□ -0.31
PRPF40A-211ENST00000493468 KIAA1549Q9HCM3 1950 aa13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 FTCDO95954 541 aa13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 IL2RAP01589 272 aa13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 HIST1H2AGP0C0S8 130 aaPredicted RBP13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 HIST1H2ADP20671 130 aa13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 HNF4AP41235 474 aa13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 ZNF136P52737 540 aa13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 AP1S2P56377 157 aa13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 RAB38P57729 211 aa13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 SLC13A2Q13183 592 aa13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 SNX1Q13596 522 aa13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 CSHL1Q14406 222 aa13.13□□□□□ -0.31
PRPF40A-211ENST00000493468 CATSPEREQ5SY80 951 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms