RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ZNF682O95780 498 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 C6orf47O95873 294 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 IL3P08700 152 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 JUNDP17535 347 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 TIE1P35590 1138 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 WASP42768 502 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 ID4P47928 161 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 SOX9P48436 509 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 IST1P53990 364 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 VLDLRP98155 873 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 MC1RQ01726 317 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 KCNAB2Q13303 367 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 DYNC1I2Q13409 638 aaKnown RBP10.23□□□□□ -0.77
USP4-214ENST00000491791 SPIDRQ14159 915 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 CLCA4Q14CN2 919 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 C16orf72Q14CZ0 275 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 RBBP5Q15291 538 aaKnown RBP10.23□□□□□ -0.77
USP4-214ENST00000491791 RPE65Q16518 533 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 SLC5A12Q1EHB4 618 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 LRRC23Q53EV4 343 aaPredicted RBP10.23□□□□□ -0.77
USP4-214ENST00000491791 C6orf141Q5SZD1 244 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.23□□□□□ -0.77
USP4-214ENST00000491791 MRM1Q6IN84 353 aaKnown RBP10.23□□□□□ -0.77
USP4-214ENST00000491791 ZNF425Q6IV72 752 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 ZC3H14Q6PJT7 736 aaKnown RBP10.23□□□□□ -0.77
USP4-214ENST00000491791 TMEM26Q6ZUK4 368 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 UBE3DQ7Z6J8 389 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 CYP4Z1Q86W10 505 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 ERI1Q8IV48 349 aaKnown RBP10.23□□□□□ -0.77
USP4-214ENST00000491791 SETD9Q8NE22 299 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 CHDHQ8NE62 594 aaPredicted RBP10.23□□□□□ -0.77
USP4-214ENST00000491791 OR14C36Q8NHC7 312 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 ZFPM2Q8WW38 1151 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 MSANTD3Q96H12 275 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 C12orf66Q96MD2 445 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 FERD3LQ96RJ6 166 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 PITX2Q99697 317 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 SLC35A5Q9BS91 424 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 NPLQ9BXD5 320 aaPredicted RBP10.23□□□□□ -0.77
USP4-214ENST00000491791 SMURF2Q9HAU4 748 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 A4GALTQ9NPC4 353 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 PRDM9Q9NQV7 894 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 ZSCAN32Q9NX65 697 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 OR6C2Q9NZP2 312 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 TMEM9Q9P0T7 183 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 SPASTQ9UBP0 616 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 RSL24D1Q9UHA3 163 aaKnown RBP10.23□□□□□ -0.77
USP4-214ENST00000491791 BAG5Q9UL15 447 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 BLOC1S6Q9UL45 172 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 PLAGL1Q9UM63 463 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 ABCG2Q9UNQ0 655 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 TDRKHQ9Y2W6 561 aaKnown RBP10.23□□□□□ -0.77
USP4-214ENST00000491791 PCDHGA8Q9Y5G5 932 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 ORC6Q9Y5N6 252 aa10.23□□□□□ -0.77
USP4-214ENST00000491791 DMDP11532 3685 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 ARRDC5A6NEK1 342 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 ENO4A6NNW6 628 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 H7BY64 318 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 ADAMDEC1O15204 470 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 NDUFS4O43181 175 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 ABCB7O75027 752 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 CLIC3O95833 236 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 IGLV3-19P01714 112 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 C9P02748 559 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 NUDT7P0C024 238 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 SRFP11831 508 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 ACP5P13686 325 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 ITGA2P17301 1181 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 DCKP27707 260 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 SHMT2P34897 504 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 DAPP51397 102 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 MAPK12P53778 367 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 YPEL5P62699 121 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 CDK6Q00534 326 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 MEF2AQ02078 507 aaPredicted RBP10.22□□□□□ -0.77
USP4-214ENST00000491791 TEKQ02763 1124 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 FBXO43Q4G163 708 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 BROXQ5VW32 411 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 OR4C11Q6IEV9 310 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 LAIR2Q6ISS4 152 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 TMEM64Q6YI46 380 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 CEP68Q76N32 757 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 CHST15Q7LFX5 561 aaPredicted RBP10.22□□□□□ -0.77
USP4-214ENST00000491791 VTCN1Q7Z7D3 282 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 TSPYL5Q86VY4 417 aaPredicted RBP10.22□□□□□ -0.77
USP4-214ENST00000491791 ARMC8Q8IUR7 673 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 TBC1D19Q8N5T2 526 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 LMNTD1Q8N9Z9 388 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 SRFBP1Q8NEF9 429 aaKnown RBP10.22□□□□□ -0.77
USP4-214ENST00000491791 CDC26Q8NHZ8 85 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 LZICQ8WZA0 190 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 PRAP1Q96NZ9 151 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 F2RL3Q96RI0 385 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 DPH2Q9BQC3 489 aaPredicted RBP10.22□□□□□ -0.77
USP4-214ENST00000491791 GABARAPL3Q9BY60 117 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 NLNQ9BYT8 704 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 REEP1Q9H902 201 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 MIEF1Q9NQG6 463 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 KLF15Q9UIH9 416 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 NDRG4Q9ULP0 352 aaKnown RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms