RNA–Protein interactions for RNA: ENST00000490283.1

SEC13-218, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-218ENST00000490283 DOPEY2Q9Y3R5 2298 aa16.34■□□□□ 0.21
SEC13-218ENST00000490283 PTPN13Q12923 2485 aa16.34■□□□□ 0.21
SEC13-218ENST00000490283 EXOC1LA0A1B0GW35 172 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 E2F3O00716 465 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 UGDHO60701 494 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 SMIM24O75264 130 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 MLYCDO95822 493 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 TGFB1P01137 390 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 IFNA16P05015 189 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 CLCN2P51788 898 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 PER3P56645 1201 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 STX4Q12846 297 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 PCBP2Q15366 365 aaKnown RBP eCLIP16.33■□□□□ 0.2
SEC13-218ENST00000490283 KHDRBS2Q5VWX1 349 aaKnown RBP16.33■□□□□ 0.2
SEC13-218ENST00000490283 KIF2BQ8N4N8 673 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 C7orf57Q8NEG2 295 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 B3GNT7Q8NFL0 401 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 UHMK1Q8TAS1 419 aaKnown RBP16.33■□□□□ 0.2
SEC13-218ENST00000490283 ATP6V1E2Q96A05 226 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 ADAP2Q9NPF8 381 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 ANKRD10Q9NXR5 420 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 ZNF180Q9UJW8 692 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 OSGIN2Q9Y236 505 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 PCDHGB6Q9Y5F9 930 aa16.33■□□□□ 0.2
SEC13-218ENST00000490283 TRBV11-1A0A0K0K1C0 115 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 KLK8O60259 260 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 SH3BGRLO75368 114 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 TBX6O95947 436 aaPredicted RBP16.32■□□□□ 0.2
SEC13-218ENST00000490283 COL6A2P12110 1019 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 HIST1H1TP22492 207 aaPredicted RBP16.32■□□□□ 0.2
SEC13-218ENST00000490283 EEF1DP29692 281 aaKnown RBP16.32■□□□□ 0.2
SEC13-218ENST00000490283 ECHS1P30084 290 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 CD96P40200 585 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 PIK3CBP42338 1070 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 GTF2H2Q13888 395 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 TECRLQ5HYJ1 363 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 UBAP2Q5T6F2 1119 aaKnown RBP16.32■□□□□ 0.2
SEC13-218ENST00000490283 GTF2H2CQ6P1K8 395 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 CLNKQ7Z7G1 428 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 TMEM132CQ8N3T6 1108 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 ACOT4Q8N9L9 421 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 ISL2Q96A47 359 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 TMEM125Q96AQ2 219 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 RGMAQ96B86 450 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 VMP1Q96GC9 406 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 TAAR6Q96RI8 345 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 IPPKQ9H8X2 491 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 PRDM7Q9NQW5 492 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 KLHL1Q9NR64 748 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 LRFN1Q9P244 771 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 NFU1Q9UMS0 254 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 CLCA3PQ9Y6N3 262 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 RELNP78509 3460 aa16.32■□□□□ 0.2
SEC13-218ENST00000490283 TRIM49D1C9J1S8 452 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 CTNSO60931 367 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 SNRPAP09012 282 aaKnown RBP16.31■□□□□ 0.2
SEC13-218ENST00000490283 ATP5A1P25705 553 aaKnown RBP16.31■□□□□ 0.2
SEC13-218ENST00000490283 CYB561P49447 251 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 RBPJQ06330 500 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 SERTAD2Q14140 314 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 ELAVL1Q15717 326 aaKnown RBP16.31■□□□□ 0.2
SEC13-218ENST00000490283 DEPDC1Q5TB30 811 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 GFRALQ6UXV0 394 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 TRMT10CQ7L0Y3 403 aaKnown RBP16.31■□□□□ 0.2
SEC13-218ENST00000490283 GOLGA7Q7Z5G4 137 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 PTGR2Q8N8N7 351 aaPredicted RBP16.31■□□□□ 0.2
SEC13-218ENST00000490283 MDS2Q8NDY4 140 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 NFAM1Q8NET5 270 aaPredicted RBP16.31■□□□□ 0.2
SEC13-218ENST00000490283 HUS1BQ8NHY5 278 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 DAZLQ92904 295 aaKnown RBP16.31■□□□□ 0.2
SEC13-218ENST00000490283 GPR78Q96P69 363 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 SIGLEC12Q96PQ1 595 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 CSF3RQ99062 836 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 NPAS2Q99743 824 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 OR51B5Q9H339 312 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 DMRT3Q9NQL9 472 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 MS4A12Q9NXJ0 267 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 ERRFI1Q9UJM3 462 aaPredicted RBP16.31■□□□□ 0.2
SEC13-218ENST00000490283 FBXW2Q9UKT8 454 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 TSC22D4Q9Y3Q8 395 aa16.31■□□□□ 0.2
SEC13-218ENST00000490283 H0YIV9 168 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 SAP18O00422 153 aaKnown RBP16.3■□□□□ 0.2
SEC13-218ENST00000490283 RTCAO00442 366 aaKnown RBP16.3■□□□□ 0.2
SEC13-218ENST00000490283 CYR61O00622 381 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 MAN1A2O60476 641 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 CLDN9O95484 217 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 ABHD2P08910 425 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 TNNI3P19429 210 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 CPN2P22792 545 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 PTX3P26022 381 aaPredicted RBP16.3■□□□□ 0.2
SEC13-218ENST00000490283 TPP2P29144 1249 aaPredicted RBP16.3■□□□□ 0.2
SEC13-218ENST00000490283 MAGEA12P43365 314 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 CCNG1P51959 295 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 HNRNPFP52597 415 aaKnown RBP16.3■□□□□ 0.2
SEC13-218ENST00000490283 MLF1P58340 268 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 CPSF6Q16630 551 aaKnown RBP eCLIP16.3■□□□□ 0.2
SEC13-218ENST00000490283 C4orf17Q53FE4 359 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 ZNF324BQ6AW86 544 aaPredicted RBP16.3■□□□□ 0.2
SEC13-218ENST00000490283 SPINK14Q6IE38 97 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 OR4C11Q6IEV9 310 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms