RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 TRPS1Q9UHF7 1281 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 SNX6Q9UNH7 406 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 PLAAQ9Y263 795 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 IGKV3D-11A0A0A0MRZ8 115 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 IGHV3-20A0A0C4DH32 117 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 BLACEA4D250 179 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 G3V2L1 256 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 RTCAO00442 366 aaKnown RBP16.29■□□□□ 0.2
MDC1-206ENST00000489540 CYR61O00622 381 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 PPP6CO00743 305 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 SEC24DO94855 1032 aaPredicted RBP16.29■□□□□ 0.2
MDC1-206ENST00000489540 CRB2Q5IJ48 1285 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 PAPD4Q6PIY7 484 aaKnown RBP16.29■□□□□ 0.2
MDC1-206ENST00000489540 IGFL2Q6UWQ7 119 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 ISLR2Q6UXK2 745 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 TRABD2AQ86V40 505 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 C4orf33Q8N1A6 199 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 CCDC63Q8NA47 563 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 C7orf57Q8NEG2 295 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 M1APQ8TC57 530 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 MTFMTQ96DP5 389 aaKnown RBP16.29■□□□□ 0.2
MDC1-206ENST00000489540 ZNF382Q96SR6 550 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 PRTFDC1Q9NRG1 225 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 MS4A12Q9NXJ0 267 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 MID2Q9UJV3 735 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 SCN3AQ9NY46 2000 aa16.29■□□□□ 0.2
MDC1-206ENST00000489540 TCRBV16S1A1N1A0A5B0 115 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 PLPP1O14494 284 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 CTNSO60931 367 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 CPA3P15088 417 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 TSPAN8P19075 237 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 MAOAP21397 527 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 DNAJB13P59910 316 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 SLAMF1Q13291 335 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 BTBD16Q32M84 506 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 LETMD1Q6P1Q0 360 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 GPRIN3Q6ZVF9 776 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 SCUBE1Q8IWY4 988 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 ZCCHC7Q8N3Z6 543 aaKnown RBP16.28■□□□□ 0.2
MDC1-206ENST00000489540 RBMXL3Q8N7X1 1067 aaKnown RBP16.28■□□□□ 0.2
MDC1-206ENST00000489540 FAM47BQ8NA70 645 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 BRIX1Q8TDN6 353 aaKnown RBP16.28■□□□□ 0.2
MDC1-206ENST00000489540 PSMF1Q92530 271 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 IQCGQ9H095 443 aaKnown RBP16.28■□□□□ 0.2
MDC1-206ENST00000489540 EPS8L2Q9H6S3 715 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 NECTIN3Q9NQS3 549 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 MKS1Q9NXB0 559 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 AHSPQ9NZD4 102 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 A0A1B0GTL3 188 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 SEMA3DO95025 777 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 PLA2G2AP14555 144 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 PKNOX1P55347 436 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 LCP2Q13094 533 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 SLC13A2Q13183 592 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 MFAP5Q13361 173 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 NADK2Q4G0N4 442 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 CCNYL1Q8N7R7 359 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 BANPQ8N9N5 519 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 SELENOMQ8WWX9 145 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 PNPLA2Q96AD5 504 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 MAPKAP1Q9BPZ7 522 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 DDX31Q9H8H2 851 aaKnown RBP16.28■□□□□ 0.2
MDC1-206ENST00000489540 MMP25Q9NPA2 562 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 NMRK1Q9NWW6 199 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 ZNF225Q9UK10 706 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 PLLPQ9Y342 182 aa16.28■□□□□ 0.2
MDC1-206ENST00000489540 H3BQF6 201 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 KALRNO60229 2985 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 OR4F21O95013 312 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 ETHE1O95571 254 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 KRT6AP02538 564 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 KRT6BP04259 564 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 ITGAMP11215 1152 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 CPN2P22792 545 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 TLX1P31314 330 aaPredicted RBP16.27■□□□□ 0.19
MDC1-206ENST00000489540 BSGP35613 385 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 KRT6CP48668 564 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 SGO1Q5FBB7 561 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 CFAP157Q5JU67 520 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 GPR180Q86V85 440 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 SRRM1Q8IYB3 904 aaKnown RBP16.27■□□□□ 0.19
MDC1-206ENST00000489540 APOPT1Q96IL0 206 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 SMC6Q96SB8 1091 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 CSF3RQ99062 836 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 SORBS1Q9BX66 1292 aaKnown RBP16.27■□□□□ 0.19
MDC1-206ENST00000489540 MFRPQ9BY79 579 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 SLC29A3Q9BZD2 475 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 BRF2Q9HAW0 419 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 ZBTB20Q9HC78 741 aaPredicted RBP16.27■□□□□ 0.19
MDC1-206ENST00000489540 OXSMQ9NWU1 459 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 LYARQ9NX58 379 aaKnown RBP16.27■□□□□ 0.19
MDC1-206ENST00000489540 PTGFRNQ9P2B2 879 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 TEKT2Q9UIF3 430 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 PHF11Q9UIL8 331 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 FBXW2Q9UKT8 454 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 B3GNT3Q9Y2A9 372 aa16.27■□□□□ 0.19
MDC1-206ENST00000489540 CCDC151A5D8V7 595 aa16.26■□□□□ 0.19
MDC1-206ENST00000489540 ENO1P06733 434 aaKnown RBP16.26■□□□□ 0.19
MDC1-206ENST00000489540 UQCRHP07919 91 aa16.26■□□□□ 0.19
MDC1-206ENST00000489540 CELA2AP08217 269 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms