RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 RPLP0P05388 317 aaKnown RBP17.14■□□□□ 0.33
VIM-206ENST00000487938 SEPHS1P49903 392 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 ZNF630Q2M218 657 aaPredicted RBP17.14■□□□□ 0.33
VIM-206ENST00000487938 ZNF697Q5TEC3 545 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 USP43Q70EL4 1123 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 ZNF547Q8IVP9 402 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 GPR65Q8IYL9 337 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 ZNF557Q8N988 423 aaPredicted RBP17.14■□□□□ 0.33
VIM-206ENST00000487938 MINDY2Q8NBR6 621 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 FBXO15Q8NCQ5 510 aaPredicted RBP17.14■□□□□ 0.33
VIM-206ENST00000487938 DENND6BQ8NEG7 585 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 HPS1Q92902 700 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 COL21A1Q96P44 957 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 CENPOQ9BU64 300 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 CXorf36Q9H7Y0 433 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 CCDC177Q9NQR7 707 aaPredicted RBP17.14■□□□□ 0.33
VIM-206ENST00000487938 ZNF229Q9UJW7 825 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 CFAP20Q9Y6A4 193 aaKnown RBP17.14■□□□□ 0.33
VIM-206ENST00000487938 MYO7AQ13402 2215 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 TBX1O43435 398 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 ALOX5P09917 674 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 ARAFP10398 606 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 PTX3P26022 381 aaPredicted RBP17.13■□□□□ 0.33
VIM-206ENST00000487938 EIF2DP41214 584 aaKnown RBP17.13■□□□□ 0.33
VIM-206ENST00000487938 DGKGP49619 791 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 TCEAL5Q5H9L2 206 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 C10orf62Q5T681 223 aaPredicted RBP17.13■□□□□ 0.33
VIM-206ENST00000487938 C12orf40Q86WS4 652 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 ARMC8Q8IUR7 673 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 ABCG4Q9H172 646 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 SCHIP1Q9P0W5 487 aaPredicted RBP17.13■□□□□ 0.33
VIM-206ENST00000487938 PCYT1BQ9Y5K3 369 aaPredicted RBP17.13■□□□□ 0.33
VIM-206ENST00000487938 ENPP4Q9Y6X5 453 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 CCDC88CQ9P219 2028 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 PLXND1Q9Y4D7 1925 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 KRT75O95678 551 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 RECKO95980 971 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 IFNA14P01570 189 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 DNTTP04053 509 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 LIMS1P48059 325 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 RGS6P49758 472 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 PCBP3P57721 371 aaKnown RBP17.13■□□□□ 0.33
VIM-206ENST00000487938 DSTNP60981 165 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 BCL7AQ4VC05 210 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 AGAP7PQ5VUJ5 663 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 TNFAIP8L2Q6P589 184 aaPredicted RBP17.13■□□□□ 0.33
VIM-206ENST00000487938 KLHL17Q6TDP4 642 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 TMIGD1Q6UXZ0 262 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 FAM83HQ6ZRV2 1179 aaPredicted RBP17.13■□□□□ 0.33
VIM-206ENST00000487938 KIAA1958Q8N8K9 716 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 HTRA1Q92743 480 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 LRIG1Q96JA1 1093 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 LRRC3BQ96PB8 259 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 OR5M11Q96RB7 305 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 CDADC1Q9BWV3 514 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 CRISPLD2Q9H0B8 497 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 EPHX3Q9H6B9 360 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 GIN1Q9NXP7 522 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 ANGPT4Q9Y264 503 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 TMEM98Q9Y2Y6 226 aa17.13■□□□□ 0.33
VIM-206ENST00000487938 ALPK3Q96L96 1907 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 AGAP5A6NIR3 686 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 LINC00271P0C7V0 271 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 MAGP20916 626 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 RPL3P39023 403 aaKnown RBP17.12■□□□□ 0.33
VIM-206ENST00000487938 ELOAQ14241 798 aaKnown RBP17.12■□□□□ 0.33
VIM-206ENST00000487938 PUM1Q14671 1186 aaKnown RBP eCLIP17.12■□□□□ 0.333e-10■■□□□ 11.8
VIM-206ENST00000487938 DHCR24Q15392 516 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 MED22Q15528 200 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 LEXMQ3ZCV2 418 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 CEACAM20Q6UY09 585 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 PTCHD4Q6ZW05 846 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 LYSMD2Q8IV50 215 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 CLIP4Q8N3C7 705 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 FAM83FQ8NEG4 500 aaPredicted RBP17.12■□□□□ 0.33
VIM-206ENST00000487938 OR5AR1Q8NGP9 310 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 NUS1Q96E22 293 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 Q96MT0 163 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 RAD9AQ99638 391 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 PSD2Q9BQI7 771 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 NLNQ9BYT8 704 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 ZDHHC5Q9C0B5 715 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 MIR1-1HGQ9H1L0 117 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 NMNAT1Q9HAN9 279 aaPredicted RBP17.12■□□□□ 0.33
VIM-206ENST00000487938 QPCTLQ9NXS2 382 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 C5AR2Q9P296 337 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 ASF1AQ9Y294 204 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 IFT52Q9Y366 437 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 NINQ8N4C6 2090 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 FFAR1O14842 300 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 AQP9O43315 295 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 LZTS3O60299 673 aaPredicted RBP17.12■□□□□ 0.33
VIM-206ENST00000487938 KDM1AO60341 852 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 UPK1BO75841 260 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 SRPRAP08240 638 aaKnown RBP17.12■□□□□ 0.33
VIM-206ENST00000487938 CISD3P0C7P0 127 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 CBLP22681 906 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 CHMP24386 653 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 DDX6P26196 483 aaKnown RBP eCLIP17.12■□□□□ 0.331e-5■■□□□ 13
VIM-206ENST00000487938 CNR2P34972 360 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms