RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 FIG4Q92562 907 aa13.33□□□□□ -0.27
CLK3-204ENST00000483723 ZFYVE21Q9BQ24 234 aa13.33□□□□□ -0.27
CLK3-204ENST00000483723 FAIM2Q9BWQ8 316 aa13.33□□□□□ -0.27
CLK3-204ENST00000483723 SLAMF7Q9NQ25 335 aa13.33□□□□□ -0.27
CLK3-204ENST00000483723 PRMT8Q9NR22 394 aaPredicted RBP13.33□□□□□ -0.27
CLK3-204ENST00000483723 AGPAT4Q9NRZ5 378 aa13.33□□□□□ -0.27
CLK3-204ENST00000483723 ACSS1Q9NUB1 689 aaPredicted RBP13.33□□□□□ -0.27
CLK3-204ENST00000483723 THADAQ6YHU6 1953 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 A0A0J9YVX5 310 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 A0A1W2PR48 441 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 PDGFBP01127 241 aaPredicted RBP13.33□□□□□ -0.28
CLK3-204ENST00000483723 ZNF26P17031 533 aaPredicted RBP13.33□□□□□ -0.28
CLK3-204ENST00000483723 UQCRC2P22695 453 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 FASP25445 335 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 AFF3P51826 1226 aaKnown RBP13.33□□□□□ -0.28
CLK3-204ENST00000483723 SIGLEC14Q08ET2 396 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 NDUFAF5Q5TEU4 345 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 ZCCHC8Q6NZY4 707 aaKnown RBP13.33□□□□□ -0.28
CLK3-204ENST00000483723 AMIGO2Q86SJ2 522 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 ZNF761Q86XN6 746 aaPredicted RBP13.33□□□□□ -0.28
CLK3-204ENST00000483723 CAMKVQ8NCB2 501 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 UCN3Q969E3 161 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 SLC35A5Q9BS91 424 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 UGT2B28Q9BY64 529 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.33□□□□□ -0.28
CLK3-204ENST00000483723 ROGDIQ9GZN7 287 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 SEMA6CQ9H3T2 930 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 CES1P1Q9UKY3 287 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 DOLKQ9UPQ8 538 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 DTNAQ9Y4J8 743 aa13.33□□□□□ -0.28
CLK3-204ENST00000483723 LOC105369274A0A096LPK9 316 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 LOC102723532A0A0G2JNH3 316 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 H0YGG7 62 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 H0YJX3 145 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 PDPK1O15530 556 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 P2RX6O15547 441 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 PROM1O43490 865 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 TNFRSF21O75509 655 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 SLC35G6P0C7Q6 338 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 PVRP15151 417 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 HOXB6P17509 224 aaKnown RBP13.32□□□□□ -0.28
CLK3-204ENST00000483723 FNTBP49356 437 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 RAB8AP61006 207 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 ARF3P61204 181 aaPredicted RBP13.32□□□□□ -0.28
CLK3-204ENST00000483723 FADDQ13158 208 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 GRAMD1BQ3KR37 738 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 KLHL35Q6PF15 583 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 OR4N4Q8N0Y3 316 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 EID3Q8N140 333 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 TMEM131Q92545 1883 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 CENPNQ96H22 339 aaPredicted RBP13.32□□□□□ -0.28
CLK3-204ENST00000483723 BTBD9Q96Q07 612 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 CHID1Q9BWS9 393 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 ASPSCR1Q9BZE9 553 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 CXorf36Q9H7Y0 433 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 C1GALT1Q9NS00 363 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 LYARQ9NX58 379 aaKnown RBP13.32□□□□□ -0.28
CLK3-204ENST00000483723 ATG4BQ9Y4P1 393 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 CSNK1G3Q9Y6M4 447 aa13.32□□□□□ -0.28
CLK3-204ENST00000483723 TNRC6BQ9UPQ9 1833 aaKnown RBP13.31□□□□□ -0.28
CLK3-204ENST00000483723 GON4LQ3T8J9 2241 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 URADA6NGE7 173 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 PRAMEF10O60809 474 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 UBXN7O94888 489 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 KRT75O95678 551 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 RAP2AP10114 183 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 TYRP1P17643 537 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 CERS1P27544 350 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 KDELR2P33947 212 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 ALDH9A1P49189 494 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 AQP4P55087 323 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 C21orf59P57076 290 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 PPP1CAP62136 330 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 VAC14Q08AM6 782 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 ATP6AP1Q15904 470 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 FAM98BQ52LJ0 330 aaKnown RBP13.31□□□□□ -0.28
CLK3-204ENST00000483723 FRMPD2BQ6IN97 320 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 ARMC6Q6NXE6 501 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 TSSK4Q6SA08 328 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 ZNF438Q7Z4V0 828 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 CLEC4FQ8N1N0 589 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 FAM162AQ96A26 154 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 ZBED6CLQ96FA7 236 aaPredicted RBP13.31□□□□□ -0.28
CLK3-204ENST00000483723 TRAPPC9Q96Q05 1148 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 SEMA6AQ9H2E6 1030 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 RAD21L1Q9H4I0 556 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 MAGIXQ9H6Y5 334 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 SLC35C2Q9NQQ7 365 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 SIRT3Q9NTG7 399 aaPredicted RBP13.31□□□□□ -0.28
CLK3-204ENST00000483723 KCMF1Q9P0J7 381 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 LRCH1Q9Y2L9 728 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 CUL9Q8IWT3 2517 aa13.31□□□□□ -0.28
CLK3-204ENST00000483723 MYO1GB0I1T2 1018 aa13.3□□□□□ -0.28
CLK3-204ENST00000483723 ZSCAN9O15535 394 aaPredicted RBP13.3□□□□□ -0.28
CLK3-204ENST00000483723 SH3BP5O60239 455 aa13.3□□□□□ -0.28
CLK3-204ENST00000483723 PRSS23O95084 383 aa13.3□□□□□ -0.28
CLK3-204ENST00000483723 ZNF888P0CJ79 500 aaPredicted RBP13.3□□□□□ -0.28
CLK3-204ENST00000483723 PCGF2P35227 344 aa13.3□□□□□ -0.28
CLK3-204ENST00000483723 CTSKP43235 329 aa13.3□□□□□ -0.28
CLK3-204ENST00000483723 RXRGP48443 463 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms